RNA id: TU45924


Basic Information

Item Value
RNA id TU45924
length 4224
RNA type TUCP
GC content 0.57
exon number 2
gene id G40768
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 38187488 ~ 38191736 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gcactttgagatatcagctgatgtacgaagggctatataaaataaatttgatttgatttgatttgatatttctcAGAAACAAAATGGACCCGAAAAAGAAAAAGCACTGTTGCATAACCTTTCTTAGATGTTTAACATTATGGAGGGAGtggagaccaaaatgaaaagcaGGGGGGGTGCTATGCTGAcaaatggaattgttttaagaccACTTTAGGTAGCaaagaaatatttttaaaaaaacgatttaataaaaTATTGATTTGGGcctatagaaacacattgaataacacattcaaaaaggacagtcaaaaaataaatcataggaaacaaggttttgaagtgtatGTCCTAAATCTCGTCGATCATTTTTTTAAACTCAGGAAATATATgtactaaatatatatatatttttacacataTTGAACCCCTTTTTTtgggtaggcacaaaactaccttaATACTTCCATTCGTTTTTTAAaccggttaccttcagatgagttccGTGACATTTGTTGGGATATCCACTTTCCATAGAGTGGTTAAATTagtcaaaccgttcggacgcttCAGACACAaaaaactgatatctctagcttaaactggtggattttgatggggattttttggTTTAGTAACTTAGATTGATGCACAATCTATAAAAATACTCCTGGGGTATGTGGCTAAGCCTTGGATGTGAAGGGTATTTGCTTGGCCTCTTTATTTATGGCACCATTTTTTCCAGGGAGCAGGTGCCTGTGAAGCACTGTCCACCCAAAGCCCTGAGGGTATGTCGATTAAAATAGAAATGGTGTCATGGTTGAGGCAGAGAGATGCAGGTGTGACCTGAACATCTGCTCGAAGCCACACACCTCATCCCtaaaccctctctctatctctctctctctgcatgaacCCTGGcactctgtcctctatccctcgTCCTGAGCTTGGCAGGGGCACGGTGTGAATCTGGGCCTGTCGTGCCTATGTGCCCAATGTTTGAACAGACAATAGATAGGCAATGTGCTAGGACAGATATGTTCGGTGTCCTTAGCCCCCGTTCCCACTCACCAGTCTGCTCCTTGCTGCCCTGGTTGAAGTCAGGGGTCATAGAGAGTTAACACAGGAGAGTCATCAGTATCCTTGGTGGTCTTCCAGGgctctttttttaaatcaagtcACACAAATCAGTATTTCTCTTAATTAAAACCTGGAAAAGTATTTGTGTCAGGAACCACACAAATATCATATAGCAATTTTCAGAGATTTGCAATGAGACTGCAGATAAGATGATCTGGAATAGCACCCATATCTGTGATGATATGGTAAACCATCATAACAGCTGGTGTGGGATGGAAAAAGGCAGTATGACATTCAGGGAGCTCTCATATGCCTGACTGTATTTGCCAATGCGATCTCCATGACTCACAAAGTTATGATGGATCAGAGCAAGTGGAATAGAGAAGGAATCACAAATGGTATGAATACACAACGTGTAAATGAGACAAACACTGTGTGAAACGTGATTTTCTGGTGTAATACACACAGTGAGATAACTATGAATCACTTGTTGCTAACAGTTGGCCATGGTATAGTTTGGATCACACTTCCCTCGTTTAACGTCCCTAATCTATTGATGGCAAAGCCAAGGGTACATCTGTATCTAATTTGAGTGGCAGATTTAATGAAATATTGTGTTATCAGATTTCATCACTGACAGTCCCAGCATTCACCCTCAGATAACGACCAAGCTTTTAATCCATCTAAATTAACTGATTGTCacaaaatatttaatcaattcaTTTGTGGCAGGAGGAAATCTCTAATGTGATCTAGAAATTATCTAAGTATGTGGGGTAAAAAGAGGTTGCCAATTTGCCATCACTTACATATTGGGGGAAACCAGAACATGGTTAGCTTGAGATTCACATAGAGTTTGTAAGCATATTAGTAAACCATCCTCCctcaaattaagaaaactaaacatcTGATGAAATAAGTTCTGAAAAAATAATTGCAGAATACAGTTTGTTCTTGATTTAGCCACAATAGATTTTTTCTTAAATAAATAACTTCTTTTTTGTAAAGACATTTTTTGAAACATTAGACATACCCTAGATCCCAATGTCATTGAATAAACATCATCAACCACTGATTCGCTGGACAAACAGTCAGTCAAGTCCTCCACTTCACATCCATAATCCTCATAACTAATATCCAATAATGTCCCTTTTGTAATTTCATCAGTTCGTCTCATTATGAAAAAATTGTTAGATCTGAGTCTCTTGTACATTGTCTTTCGAACTGGCCCGGATTAACAAAGGTTCGTGCGCCGAGCTGTGTATGGAGTTGATAGTGGAGACGTGGTTGTACGCAGACTTATAGGTGTTGTAGTGGTTCAGGTGCTCATGCTCCAGCGGGGGCAGATTCAGGTGGCCCTCCATGGTCGGCCCGCCTGTCACACAGTCCTCGTCTACATTGATGATCTCAATGGTGCGCTGTGGCGCATGGTGGTTCTGCTGGTGGTGCTGCTTCCTCATCTTGTAGAAGATGATTAGCATAACGGCGGCCATGAGGGTGATGGCCACGAAGCAGCCGATGATGATTTTGGTGGTCTTCATCACCTCATCCAGGCCGGTCATGGAGCTGTCATTCAGGTCTGTGACAGGGATGGTAAAGGTCTTCTCTGTGGCCCGGGTGGAGAGGGGCGTCCGGGccgttgtggtggtggtggaggtggacgaCACAGTCTCCCAGGATCCAGCGGAGGGGGTGGGGCCCACCTTCTGCCACACGGTGGAGCGCCCCTCGTCGTGCACTGGCTCGATGGTCTCCACTGTTACTGTGGTAAAGTAGCTGAGGACGTTCTCTGTGGAAGACACGTTGAGAGTGGCAGATGCTGTGGTATTGCCTGCTGAGTTGCTTACCATGCAGGTGTAGGTTCCCGTGTCTTGCATGGTGACATTGGTGAAGTTGAGCGTGCCGTCGTTGAGCACAGAAATGCGGATCTTGTATGCACCGTGGGTCATGATGGAGCCATTGGGTGTAATCCAACTGACTGAGGTCAGAGAGCTGGCCCTGCACTTCAGCTCTGCAGCCATACCCTCTGTCACGTTCAGGTCCGCTGGTGGCTCCACAATAACAGGTGCGTAACAGTGGAAATAGTTTTGGTCCAGCTCACCTATGTAGCGTCCCTTGTGGCTAGCTGGGGAACTGCAGCGGGCACAGCAGCTGGTGTTGGCCGGCACCATCTCTTTGAGCCACCAGCTGAGCCACAGGATGTCACAGTTGCAGTTCCAGGGGTTGTGATGGAGGTGGACTCTCTCCAGGTGGTGCAGGGGGGTGAAGAGATCATGGGGCAGCAGGGTGAGGTTGTTGTGGGCCAGGTTAAGCTCCACCAGCGACTGCAGGTCGTCAAAGGAGTTCCTTTCAATGGTTTTGATCTGGGCATGCATCATCCACAGCTTCTGCAGATGGATCAACCCTTTGAAGGAGCCAGGTCTGATGACCGTCAGCTGGTTCCCTGACATCTCTAGCTCGTCCAGCTTGACCAGTGGGATGAGGTTGGGGATCTCCTTCAGATTGCACATGCCCAGGTTCAGGTAGCGCAGGTTGCCGAGGCCCTCGAAAGCCCCCTCTGAGATATACGAGAGGCGTTTGAGTTCCCCTAAATCCAGCCGCCGTAGCGAGGGCACCCTGTTGAACGCATACGAGGGAATGCTCTCGATGGGGTTGTTCCTCAGCCACAACTCCTTGAGCTTGGAGAGGTACTCAAAGGCCCCATTGGGGATTGTGGTGAGGCGGTTGTCAAACAGCTCCAGAGTGTTGAGACTAGCCAGGCCGTTGAAGGCCCCAATCTCAATGTTTCGGATGTGGTTCTTGCTCAGCTGCAGGATCTCCAGGTGCCGCAGGTGCTTGAAGCTGTCCACCTTGATCACCTGGATGAGGTTCTCCTGCAGGTTCAGGTAGCGTGTGTTGGTGGATATGCCGTCGGGGACCTCACGGAGCCCACGCCGTGTGCAGATCACCTTGCTGAACTGGTTGCTGCAGGAGCAGACAGAGGGGCAGGTCTGAGCGCGCACCAGGCCTGCCACCGCCAGGAGCTGGAGGGCTAGAAGCAGCACAAACAAATGGTCGGACAGGGCCCGGTTCCACCTAGGACCTCTCATCGTCTGCTGCTGCCGAGAAGAGGTCATCTTGTTCAACATTCATAATTCATTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU45842 lncRNA downstream 120727 38066490 ~ 38066761 (-) True LOC118964575
TU45836 lncRNA downstream 121189 38061165 ~ 38066299 (-) True G40683
TU45833 lncRNA downstream 129134 38058130 ~ 38058354 (-) True G40680
TU45832 lncRNA downstream 129704 38057553 ~ 38057784 (-) True G40679
TU45673 lncRNA downstream 162488 38024756 ~ 38025000 (-) True G40531
TU45925 lncRNA upstream 364 38192100 ~ 38192367 (-) True G40769
TU45926 lncRNA upstream 926 38192662 ~ 38193071 (-) True G40770
TU45923 lncRNA upstream 2469 38194205 ~ 38195330 (-) True G40767
TU45927 lncRNA upstream 4704 38196440 ~ 38196678 (-) True G40771
TU45932 lncRNA upstream 11077 38202813 ~ 38203070 (-) True G40776
XR_005051684.1 mRNA downstream 120883 38065959 ~ 38066605 (-) False LOC118964575
XR_005051686.1 mRNA downstream 125825 38061089 ~ 38061663 (-) True LOC118964577
XM_036989519.1 mRNA downstream 493637 37688750 ~ 37693851 (-) True LOC118966689
XM_036989509.1 mRNA downstream 499743 37682644 ~ 37687745 (-) True LOC118966688
XM_036989498.1 mRNA downstream 505849 37676381 ~ 37681639 (-) True LOC118966685
LOC110520456 mRNA upstream 823339 39015075 ~ 39019091 (-) True LOC110520456
XM_021600757.2 mRNA upstream 889267 39081003 ~ 39084318 (-) True LOC110522389
LOC118966691 mRNA upstream 909089 39100825 ~ 39115097 (-) True LOC118966691
XM_036977133.1 mRNA upstream 1123316 39315052 ~ 39336321 (-) False man2a2
XM_036977115.1 mRNA upstream 1123316 39315052 ~ 39336324 (-) False man2a2
TU45886 other downstream 61763 38125280 ~ 38125725 (-) True G40732
TU45214 other downstream 470455 37716540 ~ 37717033 (-) True G40079
TU43930 other downstream 1676659 36508538 ~ 36510829 (-) True G38855
TU43851 other downstream 1778469 36370094 ~ 36409019 (-) True LOC110522187
TU43028 other downstream 2465432 35721440 ~ 35722056 (-) True G38045
TU47067 other upstream 830069 39021805 ~ 39022025 (-) True G41868
TU52237 other upstream 4846992 43038728 ~ 43129029 (-) True tspan9a
TU55610 other upstream 7529069 45720805 ~ 45721124 (-) True G49774
TU55801 other upstream 7757222 45948958 ~ 45949951 (-) True G49962
TU57229 other upstream 8873038 47064774 ~ 47119033 (-) False G51214

Expression Profile