RNA id: TCONS_00026557


Basic Information

Item Value
RNA id TCONS_00026557
length 2493
RNA type mRNA
GC content 0.49
exon number 14
gene id XLOC_013452
representative False

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 25783446 ~ 25905623 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGTGGACACTAAACATGACACGTGTCTTTTTCCTGTTCCTCCTCAACGTCCTCCTGGTCGGACGGTGTCAATCAGCAGAAGACGACGTCACCCCTCGCCTCAGCTTCTCTTACAATGCAAACGAGAGGTCGGCCAAGAGATTTTCACCCAGTGGAGTCTTCAATTACACCTCTCTGCTCCTCAGTAAAGAGGATAACATGCTGTACGTCGGCGCTCGAGAGACTCTCTTCGCACTTAATATCAGCGATATCAGCAGAACGCAGATGCAGCGCAACTTAACGTGGAGCACGCCGCAGAGAAAAAGAGATGAATGCAGTTTCAAAGGGAAGGACTTAAAGACGGACTGCTTCAATTACATCAAGATTTTACTGCGTGTGAACAGCACTCATCTGTACGTGTGTGGAACGTATGCCTTCAGTCCAATCTGCACATACATCGTAAGTACTAACACATCAAACTTTTCCCTGGTGCGCAATGAAGTGGGAGAAATAATGACTGAAGATGGTCGAAGCCGATGCCCCTATAACCCTGAATACAAGTCCACGGCCATCATGGCTGatgGAGAACTGTATGCTGGCACTGTCAGTAATTTCCAAGGAAACGATCCCATCATTTACAAAAGTCTTGGCCAGGGCACAGCACTAAAGACTGAAAACTCACTGAACTGGCTTCAAGaCCCCGCTTTTGTGGGCTCAGCCTACATTCAGGAGAGTTTGCCCAAAGGCAATGCAGTGGGCGATGATGATAAGATTTACTTCTTCTTCAGTGAAGCAGGAAAGGAGTTCGATTTCTTTGACAACACTATTGTGTCACGCATCGCTCGCGTGTGTAAGGGTGATAAAGGTGGAGAGAGGGTTCTTCAGAAGAAATGGACGACCTTTCTGAAAGCCCAACTCCTGTGTTCACTGCCTGACGATGGCTTCCCCTTCAACATCATCCAAGACATGTTTGTACTGACGCCCAGCAAAGAAGACTGGAAGAAAACCATGTTTTATGGAGTCTTCACCTCACAGTGGTACAAAGGTGCTTCAGGGAGCTCAGCTGTATGTGCTTTCACTATGGACCAAGTTGAAGAGGCGTTTAATGGACGTTACCGGGAAGTTAATCGCGAGACGCAGCAGTGGTACACCTACAACCATCCAGTGCCAGAACCCAGACCTGGAGCCTGCATCACTAACACGGCCCGCGCCCAGGGGATCTCCTCTTCCCTGCACATGCCTGATAGAGTCCTGAACTTTGTGAAAGACCACTTCCTCATGGATAATGTGATTCGCAGTCAGCCTCTGCTGTTGAAACGAAATGTGCGCTACACGCAGCTCGCTGTGCACAGAGTACAGGCTCTCCACAAGACCTATGATGTGCTTTTCATTGGCACAGATGACGGCAGAATCCACAAAGCCATCAACGTTAAAAACAAGATGTATATCATTGAAGAGCTGGTGATTTTTCCTGAGCCTCAATCCGTGCAGCACATCGAACTGGATGATGAGAAGGGACTGTTGTTTGTGTCCAGCTATTCTGGGCTGGTGGAAATCCCTCTTGCCAACTGCTCTAACTACCAGAGCTGTGGAGAGTGTGTGCTGTCTAGAGACCCATACTGCGCCTGGACAGGGAAGCAGTGTTCTAATGTCAAGCATGCGTCCTCTAAGAGTCAATGGCAACAAGATGTAGAAGATGCCAACACTGCCATTTGCAAAATGCCCAGTCCCCGTTCAGGAAGACCACGTGTTCCAGCATGCCATGTGGTAGAAATCCCAGCAAACACATTTACAGTTCTACCCTGCAAACTGCGATCCAATTTAGCTGCAAGACGATGGGAGTACAGTGATACCGCAGAGCGTTTTGTCTACCCAAGTCCTGATGGCGGCCTGGTGGTTGTAGCCCAAGTGGACAGGCAGGAAAACTACGCGTGTTGGTCCGAAGAAGGCAACTATCGGCAACTTCTGGCCAGTTACTGTGTTAAAGCGGAGCACGAAAGCACCACCCTGACTGGACGTTCCCGAACACAGCAGGTGACCCAAGGAGAGACTATTCTACCTGGCGAAACGTGGTCACCACAAAAAACCAAAACATACTGGAATGAGCTGATTGTTGTGTGTGCCTTACTCGTGTTCTCCCTAGTAGTACTGTCGCTTTTTGTGGCGTACAGGAATCGAGATAGGATGAAGTCCATGTTAAAGGAAGGCGAGTGTCCTAACATGCAACAGAAGAAGCCGCGAATTCCAGGGAAGCACACTGAAAGCCTTCCGTTAAATGGCAACAACATCCCGCCCTCAGTGTCCGACCACAAGGGCTACCAGACTCTTAATGACAACTACATCTGCAGCACTCCAACCCACGAATGTTCCTCTCCCGAAAACAGCAAGAGCTTCTCAGAGTCTGAAAAGAGACTGTTGACTGTTAACTTAAAGGAGAGCCATGTGGAGATCTCACCCACTTGCCCGCGGCCTCGGGTACGACTAGGCTCGGAGATTAAAGACTCCATTGTTTAA

Function

GO:

id name namespace
GO:0001755 neural crest cell migration biological_process
GO:0050919 negative chemotaxis biological_process
GO:0048843 negative regulation of axon extension involved in axon guidance biological_process
GO:0007411 axon guidance biological_process
GO:0030335 positive regulation of cell migration biological_process
GO:0071526 semaphorin-plexin signaling pathway biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0005615 extracellular space cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0045499 chemorepellent activity molecular_function
GO:0030215 semaphorin receptor binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070705-31 Predicted to enable chemorepellent activity and semaphorin receptor binding activity. Predicted to be involved in several processes, including generation of neurons; neural crest cell migration; and semaphorin-plexin signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in extracellular space. Predicted to be integral component of plasma membrane. Orthologous to human SEMA4B (semaphorin 4B).

Ensembl:

ensembl_id ENSDART00000042074

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00026556 lncRNA downstream 21108 25760060 ~ 25762338 (-) True XLOC_013451
TCONS_00027346 lncRNA downstream 37825 25697275 ~ 25745621 (-) True XLOC_013450
TCONS_00026553 lncRNA downstream 137783 25596239 ~ 25645663 (-) True XLOC_013449
TCONS_00027345 lncRNA downstream 558010 25180539 ~ 25225436 (-) True XLOC_013445
TCONS_00027344 lncRNA downstream 558059 25180539 ~ 25225387 (-) False XLOC_013445
TCONS_00026564 lncRNA upstream 440902 26296165 ~ 26299776 (-) False XLOC_013456
TCONS_00027347 lncRNA upstream 440902 26296165 ~ 26299843 (-) True XLOC_013456
TCONS_00027348 lncRNA upstream 1199583 27054846 ~ 27066350 (-) True XLOC_013467
TCONS_00027349 lncRNA upstream 1503065 27358328 ~ 27362251 (-) True XLOC_013472
TCONS_00027350 lncRNA upstream 1826038 27681301 ~ 27682853 (-) True XLOC_013474
TCONS_00026555 mRNA downstream 11893 25754838 ~ 25771553 (-) False XLOC_013451
TCONS_00026551 mRNA downstream 137160 25563292 ~ 25646286 (-) False XLOC_013449
TCONS_00026550 mRNA downstream 137160 25563292 ~ 25646286 (-) False XLOC_013449
TCONS_00026552 mRNA downstream 137766 25572222 ~ 25645680 (-) False XLOC_013449
TCONS_00026549 mRNA downstream 214452 25563292 ~ 25568994 (-) False XLOC_013449
TCONS_00026561 mRNA upstream 241551 26096814 ~ 26101800 (-) True XLOC_013453
TCONS_00026562 mRNA upstream 269400 26124663 ~ 26126258 (-) True XLOC_013454
TCONS_00026565 mRNA upstream 605181 26460444 ~ 26675699 (-) False XLOC_013457
TCONS_00026566 mRNA upstream 627112 26482375 ~ 26510545 (-) True XLOC_013457
TCONS_00026567 mRNA upstream 794597 26649860 ~ 26715655 (-) False XLOC_013458
TCONS_00026554 other downstream 25169 25754838 ~ 25758277 (-) False XLOC_013451
TCONS_00026548 other downstream 266815 25515893 ~ 25516631 (-) True XLOC_013448
TCONS_00026541 other downstream 624669 25158661 ~ 25158777 (-) True XLOC_013444
TCONS_00026536 other downstream 786799 24990268 ~ 24996647 (-) False XLOC_013441
TCONS_00026529 other downstream 1223049 24560187 ~ 24560397 (-) True XLOC_013437
TCONS_00026563 other upstream 348040 26203303 ~ 26203389 (-) True XLOC_013455
TCONS_00026577 other upstream 1025209 26880472 ~ 26894703 (-) False XLOC_013464
TCONS_00026581 other upstream 1281602 27136865 ~ 27136982 (-) True XLOC_013468
TCONS_00026582 other upstream 1451661 27306924 ~ 27307040 (-) True XLOC_013469
TCONS_00026584 other upstream 1479678 27334941 ~ 27335059 (-) True XLOC_013471

Expression Profile

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