Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00026560 |
| length | 697 |
| RNA type | processed_transcript |
| GC content | 0.48 |
| exon number | 2 |
| gene id | XLOC_013452 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007129.7 |
| NCBI id | CM002902.2 |
| chromosome length | 51023478 |
| location | 25783446 ~ 25905623 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0001755 | neural crest cell migration | biological_process |
| GO:0050919 | negative chemotaxis | biological_process |
| GO:0048843 | negative regulation of axon extension involved in axon guidance | biological_process |
| GO:0007411 | axon guidance | biological_process |
| GO:0030335 | positive regulation of cell migration | biological_process |
| GO:0071526 | semaphorin-plexin signaling pathway | biological_process |
| GO:0005887 | integral component of plasma membrane | cellular_component |
| GO:0005615 | extracellular space | cellular_component |
| GO:0016020 | membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0045499 | chemorepellent activity | molecular_function |
| GO:0030215 | semaphorin receptor binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-070705-31 | Predicted to enable chemorepellent activity and semaphorin receptor binding activity. Predicted to be involved in several processes, including generation of neurons; neural crest cell migration; and semaphorin-plexin signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in extracellular space. Predicted to be integral component of plasma membrane. Orthologous to human SEMA4B (semaphorin 4B). |
| ensembl_id | ENSDART00000144145 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00026556 | lncRNA | downstream | 92672 | 25760060 ~ 25762338 (-) | True | XLOC_013451 |
| TCONS_00027346 | lncRNA | downstream | 109389 | 25697275 ~ 25745621 (-) | True | XLOC_013450 |
| TCONS_00026553 | lncRNA | downstream | 209347 | 25596239 ~ 25645663 (-) | True | XLOC_013449 |
| TCONS_00027345 | lncRNA | downstream | 629574 | 25180539 ~ 25225436 (-) | True | XLOC_013445 |
| TCONS_00027344 | lncRNA | downstream | 629623 | 25180539 ~ 25225387 (-) | False | XLOC_013445 |
| TCONS_00026564 | lncRNA | upstream | 390567 | 26296165 ~ 26299776 (-) | False | XLOC_013456 |
| TCONS_00027347 | lncRNA | upstream | 390567 | 26296165 ~ 26299843 (-) | True | XLOC_013456 |
| TCONS_00027348 | lncRNA | upstream | 1149248 | 27054846 ~ 27066350 (-) | True | XLOC_013467 |
| TCONS_00027349 | lncRNA | upstream | 1452730 | 27358328 ~ 27362251 (-) | True | XLOC_013472 |
| TCONS_00027350 | lncRNA | upstream | 1775703 | 27681301 ~ 27682853 (-) | True | XLOC_013474 |
| TCONS_00026555 | mRNA | downstream | 83457 | 25754838 ~ 25771553 (-) | False | XLOC_013451 |
| TCONS_00026551 | mRNA | downstream | 208724 | 25563292 ~ 25646286 (-) | False | XLOC_013449 |
| TCONS_00026550 | mRNA | downstream | 208724 | 25563292 ~ 25646286 (-) | False | XLOC_013449 |
| TCONS_00026552 | mRNA | downstream | 209330 | 25572222 ~ 25645680 (-) | False | XLOC_013449 |
| TCONS_00026549 | mRNA | downstream | 286016 | 25563292 ~ 25568994 (-) | False | XLOC_013449 |
| TCONS_00026561 | mRNA | upstream | 191216 | 26096814 ~ 26101800 (-) | True | XLOC_013453 |
| TCONS_00026562 | mRNA | upstream | 219065 | 26124663 ~ 26126258 (-) | True | XLOC_013454 |
| TCONS_00026565 | mRNA | upstream | 554846 | 26460444 ~ 26675699 (-) | False | XLOC_013457 |
| TCONS_00026566 | mRNA | upstream | 576777 | 26482375 ~ 26510545 (-) | True | XLOC_013457 |
| TCONS_00026567 | mRNA | upstream | 744262 | 26649860 ~ 26715655 (-) | False | XLOC_013458 |
| TCONS_00026554 | other | downstream | 96733 | 25754838 ~ 25758277 (-) | False | XLOC_013451 |
| TCONS_00026548 | other | downstream | 338379 | 25515893 ~ 25516631 (-) | True | XLOC_013448 |
| TCONS_00026541 | other | downstream | 696233 | 25158661 ~ 25158777 (-) | True | XLOC_013444 |
| TCONS_00026536 | other | downstream | 858363 | 24990268 ~ 24996647 (-) | False | XLOC_013441 |
| TCONS_00026529 | other | downstream | 1294613 | 24560187 ~ 24560397 (-) | True | XLOC_013437 |
| TCONS_00026563 | other | upstream | 297705 | 26203303 ~ 26203389 (-) | True | XLOC_013455 |
| TCONS_00026577 | other | upstream | 974874 | 26880472 ~ 26894703 (-) | False | XLOC_013464 |
| TCONS_00026581 | other | upstream | 1231267 | 27136865 ~ 27136982 (-) | True | XLOC_013468 |
| TCONS_00026582 | other | upstream | 1401326 | 27306924 ~ 27307040 (-) | True | XLOC_013469 |
| TCONS_00026584 | other | upstream | 1429343 | 27334941 ~ 27335059 (-) | True | XLOC_013471 |
