RNA id: TCONS_00026564


Basic Information

Item Value
RNA id TCONS_00026564
length 827
lncRNA type lincRNA
GC content 0.31
exon number 4
gene id XLOC_013456
representative False

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 26296165 ~ 26299843 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gattacaattttttttttaattgtttcgtCATAACATTTGGCTGTTCCCAGAGAGCAGACTGATTCCTTAAAGAATTTTTCCAAACAATGTGGGGAATTTGGTGCTGATAAATTAAGTGGAGCTGCAAGATTTACAACAACCAATCAGCCAATTGTCATAAGACACTAAAAGCTGAAGCACTGCCGTCACGCAAGTAATGATTTATTCTGAAGAAAAGCTGAACATAGGGATGACTCTTGGAAATCAGAAACTGTTGATGAACACTGGTGCAGATATTGGCAGTGCACAACTTCACTCacttaaaaatacattgaaatacaGATGCTGAGATAAAagttttgggtcacactttacaataaggttcattagttaatgttaattaatgcattcactaacatgaacaaacaatgaacaatacatctactactgtatttgttcatgttagtttaagttagttaatgaaaatacagtagttcattgttagttcaagttaactcatggtgcattaactaatgttaacaagcatggacttggatgttaaaattgcatcagtaaatgttcaattatgattaataaatggtgTACAGTACatctgttgttcatgattagtttatgttagtaaatgcattaactaatgaaccttattgtaaaatgttaccaagTTTTGGTGACGTTATGGTGTAATTTTTTTCCAAGAGCCTGTGTTAGTTGTGTATTTTAGagatttcaagtttttttttcttctcttgtgATTACTCTCACTTTACAATCAATTTGTAAAAATACTTAATTAAGAGTAAATAcctttaataaaaatgtgtattgc

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000151156

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00026556 lncRNA downstream 533827 25760060 ~ 25762338 (-) True XLOC_013451
TCONS_00027346 lncRNA downstream 550544 25697275 ~ 25745621 (-) True XLOC_013450
TCONS_00026553 lncRNA downstream 650502 25596239 ~ 25645663 (-) True XLOC_013449
TCONS_00027345 lncRNA downstream 1070729 25180539 ~ 25225436 (-) True XLOC_013445
TCONS_00027344 lncRNA downstream 1070778 25180539 ~ 25225387 (-) False XLOC_013445
TCONS_00027348 lncRNA upstream 755070 27054846 ~ 27066350 (-) True XLOC_013467
TCONS_00027349 lncRNA upstream 1058552 27358328 ~ 27362251 (-) True XLOC_013472
TCONS_00027350 lncRNA upstream 1381525 27681301 ~ 27682853 (-) True XLOC_013474
TCONS_00027351 lncRNA upstream 1502775 27802551 ~ 27819952 (-) False XLOC_013475
TCONS_00027352 lncRNA upstream 1517422 27817198 ~ 27819714 (-) False XLOC_013475
TCONS_00026562 mRNA downstream 169907 26124663 ~ 26126258 (-) True XLOC_013454
TCONS_00026561 mRNA downstream 194365 26096814 ~ 26101800 (-) True XLOC_013453
TCONS_00026559 mRNA downstream 390542 25783446 ~ 25905623 (-) False XLOC_013452
TCONS_00026558 mRNA downstream 390591 25783446 ~ 25905574 (-) False XLOC_013452
TCONS_00026557 mRNA downstream 440902 25783446 ~ 25855263 (-) False XLOC_013452
TCONS_00026565 mRNA upstream 160668 26460444 ~ 26675699 (-) False XLOC_013457
TCONS_00026566 mRNA upstream 182599 26482375 ~ 26510545 (-) True XLOC_013457
TCONS_00026567 mRNA upstream 350084 26649860 ~ 26715655 (-) False XLOC_013458
TCONS_00026568 mRNA upstream 379784 26679560 ~ 26715156 (-) True XLOC_013458
TCONS_00026569 mRNA upstream 471191 26770967 ~ 26781692 (-) False XLOC_013459
TCONS_00026563 other downstream 92776 26203303 ~ 26203389 (-) True XLOC_013455
TCONS_00026560 other downstream 390567 25855010 ~ 25905598 (-) True XLOC_013452
TCONS_00026554 other downstream 537888 25754838 ~ 25758277 (-) False XLOC_013451
TCONS_00026548 other downstream 779534 25515893 ~ 25516631 (-) True XLOC_013448
TCONS_00026541 other downstream 1137388 25158661 ~ 25158777 (-) True XLOC_013444
TCONS_00026577 other upstream 580696 26880472 ~ 26894703 (-) False XLOC_013464
TCONS_00026581 other upstream 837089 27136865 ~ 27136982 (-) True XLOC_013468
TCONS_00026582 other upstream 1007148 27306924 ~ 27307040 (-) True XLOC_013469
TCONS_00026584 other upstream 1035165 27334941 ~ 27335059 (-) True XLOC_013471
TCONS_00026588 other upstream 2020954 28320730 ~ 28324155 (-) True XLOC_013478

Expression Profile

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