RNA id: TCONS_00026567


Basic Information

Item Value
RNA id TCONS_00026567
length 2175
RNA type mRNA
GC content 0.46
exon number 14
gene id XLOC_013458
representative False

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 26649860 ~ 26715655 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

aattaaatgtgtcttaaaaccttcttttattggttattttcacaattcatCATGGCAttactgtcaaaaatgggacaaatgagctcaaAAGCCAAATTCTGGACTATGTCAGAGGGGAGCTTGGCCTTTTGAACCATCtaaaccacccccccccccccaccccccggcTAAGGGCCTGCtaatgcaatgcaaaaaaagcatctaatcaatcaatcaatcaatcaatcaatcaatcaatcaatcaatcaatcaatcaatcaatcaatcaatcaatcaatcaatcaatgaagtGACACTTGGTTATTCATATAGAAATAGAATTCATATGCATATGtaaaatgtcttgaaaatatgtaatgtctgaaaataaaattaaagttaaagatAAGTGCGCAGAAGTGAATTGCGCAGCTACTCTGAGCTCAGCGGTAGGGGGAGGGGCAGGCTCGCATTATTACAGGAAACCATTCATTTTTCTGCCAGATAGAATCGCGGCATGTTTCTCGTCAATTCTATTGACGCTCTGTGCTAGTGTGCATGAAGAGCTTTAGGAAGAGAAAGTGACAGAAATCTCAGTCATACTGATATAGCAATGAGCAGCAGGACAGGTGACAAAATTGTGAAATGACTGACTACCTTAAAAGGTCTTGGCCCTCAACACTAAAGAGTAGCACGATAGTCATGAGAACGGAAGTTGTTATTCTTCAGCAGCCGTTGCCTGTTTGTGTACCACCAAACCATGAGGTAACTTTAAGGGTTCAAGCAAAAGGCACTGGTGCACTGAAATATCAGTGGTTTGATAAACAGCAGACAGAGGTGGTAGGTGGGACAGAACCCGAGCTCACCGTCAGTCTCCAGAGGTCTGGAAATTATGTTTGCAGAGTGAGCGACCTGTACTGTAACTATCAGTTCACCGAATGGGTGAAAGTGAGAATCTTAGATGAAGCAGGTGTTTCTAACACATGGAGAGGGGAACCCCATGTTGTCATTCACCCGAAAAGCCAAACCATTAAACCAGGGGAGACTTTCACTCTTAAATGCACTGCGTTGGGCAAGCCCGCACCAACCTACCAGTGGTATAGAAATGGTCGCATCCTTACTGAAGAGACCAAAGAAACACTCAAGGTAGAAAATGCTGGGGCAGAGGTTGCTGGTTCATACCTCTGTGCTGTGTCAAATATTTTGGAGGAGAGATGGTCTGAAGCAGCTGAAATTGAGATTGCACCTCCAGATCAGCTACCAACAACCACGCTTATGGCAACCGACAAAGTGGCATTACTGATTGGGAACCTGAACTACAGCCACCATCCCGGTTTGATGGCCCCTACCATGGATGTCCATGAGCTGGCCAATCTTCTGCAGCAGCTGGATTTCAGAGTGGTTTCTCTGCTTGATCTCACCCTTGAAGAAATGCAGGCGGCCATTGACAAATTTCTGCAGCTCTTGGACCGTGGAGTGTATGCTGTTTTTTACTACGCTGGCCATGGCTATGAGCACGCCGGCCGAAATTACCTGGTGGCCATTGATGCTCCACGGCCCTACCGTAcagaaaattgtgtgtgtgtacagagagTAATGCGCAGCATGCAGGAAAGAAAAGCGCAGCTCAACGTCATTCTCCTGGACACCTGCAGGAAATGGTACAATCAAAAAGGCCCTCCCTCTGAAATTAAGCCTTTGGCTCCTCTGGGCAACACTGTGTATGGATACGCCACGAGTGAAGATGCAGAGGCTTTCGAGGTTCAAGACGGTGGCAAGAGCACGGGGATCTTCACCAAGTACCTTAACAAACATGTCTTACAGCCAGAGAGGGTGACACGAGTCTTAGAGCAGGTCTCTGAAGATTTGGGAAAGGACCCACTGGTTCGCGGCAGGCAGGTTGTGGAGATCAGACACACTCTGATGGAGCCACGGGCTTTGACTGATCCTGTGCGAACATCTGGACACACCATGGAGCTCCGCCGCCGTGATGCTTATTGGAAACAGGCTAATGTTCTTCCTGGTCGAAGGACTCTGCGCTTTCATCACAGTGGTGTCCAGGTGGAGCTCAATTTCTCTGCGCTGTTCTCCAATGTCCTGGTTGTGTTTGGTACGGTGAGGAACACGAGCGCCATGGCCCAGGACTGCACTCTCATTCTTGAAAGCGAACCAAATTATTACTGCACGACATTTTAA

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0004197 cysteine-type endopeptidase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050419-182 Predicted to enable cysteine-type endopeptidase activity. Predicted to act upstream of or within proteolysis. Human ortholog(s) of this gene implicated in immunodeficiency 12; lymphoma; and non-Hodgkin lymphoma. Orthologous to human MALT1 (MALT1 paracaspase).

Ensembl:

ensembl_id ENSDART00000181497

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00027347 lncRNA downstream 350017 26296165 ~ 26299843 (-) True XLOC_013456
TCONS_00026564 lncRNA downstream 350084 26296165 ~ 26299776 (-) False XLOC_013456
TCONS_00026556 lncRNA downstream 887522 25760060 ~ 25762338 (-) True XLOC_013451
TCONS_00027346 lncRNA downstream 904239 25697275 ~ 25745621 (-) True XLOC_013450
TCONS_00026553 lncRNA downstream 1004197 25596239 ~ 25645663 (-) True XLOC_013449
TCONS_00027348 lncRNA upstream 339191 27054846 ~ 27066350 (-) True XLOC_013467
TCONS_00027349 lncRNA upstream 642673 27358328 ~ 27362251 (-) True XLOC_013472
TCONS_00027350 lncRNA upstream 965646 27681301 ~ 27682853 (-) True XLOC_013474
TCONS_00027351 lncRNA upstream 1086896 27802551 ~ 27819952 (-) False XLOC_013475
TCONS_00027352 lncRNA upstream 1101543 27817198 ~ 27819714 (-) False XLOC_013475
TCONS_00026566 mRNA downstream 139315 26482375 ~ 26510545 (-) True XLOC_013457
TCONS_00026562 mRNA downstream 523602 26124663 ~ 26126258 (-) True XLOC_013454
TCONS_00026561 mRNA downstream 548060 26096814 ~ 26101800 (-) True XLOC_013453
TCONS_00026559 mRNA downstream 744237 25783446 ~ 25905623 (-) False XLOC_013452
TCONS_00026558 mRNA downstream 744286 25783446 ~ 25905574 (-) False XLOC_013452
TCONS_00026569 mRNA upstream 55312 26770967 ~ 26781692 (-) False XLOC_013459
TCONS_00026570 mRNA upstream 56090 26771745 ~ 26781616 (-) True XLOC_013459
TCONS_00026571 mRNA upstream 69313 26784968 ~ 26785861 (-) True XLOC_013460
TCONS_00026572 mRNA upstream 72428 26788083 ~ 26797723 (-) True XLOC_013461
TCONS_00026573 mRNA upstream 84406 26800061 ~ 26811959 (-) True XLOC_013462
TCONS_00026563 other downstream 446471 26203303 ~ 26203389 (-) True XLOC_013455
TCONS_00026560 other downstream 744262 25855010 ~ 25905598 (-) True XLOC_013452
TCONS_00026554 other downstream 891583 25754838 ~ 25758277 (-) False XLOC_013451
TCONS_00026548 other downstream 1133229 25515893 ~ 25516631 (-) True XLOC_013448
TCONS_00026541 other downstream 1491083 25158661 ~ 25158777 (-) True XLOC_013444
TCONS_00026577 other upstream 164817 26880472 ~ 26894703 (-) False XLOC_013464
TCONS_00026581 other upstream 421210 27136865 ~ 27136982 (-) True XLOC_013468
TCONS_00026582 other upstream 591269 27306924 ~ 27307040 (-) True XLOC_013469
TCONS_00026584 other upstream 619286 27334941 ~ 27335059 (-) True XLOC_013471
TCONS_00026588 other upstream 1605075 28320730 ~ 28324155 (-) True XLOC_013478

Expression Profile

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