RNA id: TCONS_00026569


Basic Information

Item Value
RNA id TCONS_00026569
length 1884
RNA type mRNA
GC content 0.36
exon number 9
gene id XLOC_013459
representative False

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 26770967 ~ 26781692 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATTATACGTCGActgtctaataaaaaaaaatctgtcgcCTTTTCACCAGTGACCTGTAGAGGGCAGCAGCGCACTAATCTTACGACATTCTACGAGCGCGAAGAAGAACATCATCTCCCGTGTAACATTACTGTGTACATAAGCATGGTatagattttagttttttttatttcttttgcgCTAAAATGCCTTTAATATTGATGTGTGGATACCCGTGCAGTGGTAAAACCAGACGAGCACAGGAACTCAGAGACTACTTCACACAAAACACAGGAAGAAAGGTTCATATTGTTGGAGATGAAGATCAAGGAATTGACAAGAACTCTGTTTATGCAGactcGCAGAAGGAGAAGAACCTGAGAGGAGCACTGAGAGCTGAAGTGGAGAGGAAAGTCAATAAAGATGACATTGTGATTCTTGATTCCTTAAATTACATTAAAGGCTACAGATATGAGCTGTTTTGTCTCatcaaacatacacaaacacctcACTGCTTGGTGTACTCTTTGACGTCAGCTGACTTGAGCTCAGAATGGAATAAAGACAGAGAGGCAGATTCTCAGTACACTCAGGAAATCCTTGATGCGCTAATCCTGCGTTTTGAAGCCCCTGATTCAAGAAATAGATGGGATAGTCCCCTCTTTACTATTCAGCAAGACGACTCGCTTCCATTTGAAGCCATCTGTGATGCGCTATTTAAAAGAAAAGCACCACCACCTAATCAGTCCACGAAGAGCCAACCACTCTCATCCACAAACTTTCTGTACGAGTTGGACAAAGTTACTCAAGATGTGCTAATGGCTGTTCTTGAGTCACAGAAGACCAGCGTCCCCGGAGATCTCATTTCCATTCCTGGAGCCACAGAAAAGATTGAACTCACAAGAAGTCTTAACATGGTGGAGCTGAGGAAACTCAGACGTCAGTTCATCAGTTACACCAAGATGCACCCAACAGAGAACATTGGACAGATTGCCAATATGTTTGTGCAGTATCTTAATAAGAGCATGCATTAACAGGTGTTTTTCTTATTGTAATTCTtcaggaaatatttattttttaagttgcaTTTTAACAACATTTCAAGTGCAATAAAATGTCAATTCTTATCATGTCTTTTTATATCCACTGATGTATTTATACATTCACCCAACAATGagattttactcattatttactcactcttaagtGGTTTCAACCCTTTAAAACTTTCTTCATTTTCTTAAACACAGATGATGATAATTTAAACAATTCTGGAAAAAAATGCCCTGacagtcaatggctactggtttccaacattcttcaaaatatattttgttaaacagaagaaagaaattcaaagagGTTTGAAAACAACAGAGGAAGAGTGAATGATGACACAACAACTATCTCTTTAAGGAGTAATGGGCAAagtatgttgtgttttttatcaTGTAACAAAAGCTACTTTTCTTGATAAGGGCCTATAATGCCCATTGTTTACAAGATGCGAAACAATACTCTGATGTCCCTAGTGTgtctatgtgaagtttcagctcaaaataccccacataTAATGTTTTGTTGCTATTTGAAGCTGCACCTTTTAGGCTTCGATCcttattgtgccattttggtgactgtcactttaaatttaaatgagattgctGATATTATCTTACAGGAGTACTGTATTGAATtgtaaaatatatcaaaataaacagtaaaaatcaaataatttaaaacattaaatctaCAGTCTGAAATTGGTTTAAATAGAATATTAATCAAATTTTTAGTGACTAATGTGTAAACTTTGTACTACCATATACTTTTAGAAATACAATAGgacattttatttacaaatgcatACTTTGAAagtaaattatgaaaaaaaaattgtaaaac

Function

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0002098 tRNA wobble uridine modification biological_process
GO:0033588 elongator holoenzyme complex cellular_component
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
ko03016 Transfer RNA biogenesis

ZFIN:

id description
ZDB-GENE-060825-174 Predicted to enable ATP binding activity. Orthologous to human KTI12 (KTI12 chromatin associated homolog).

Ensembl:

ensembl_id ENSDART00000076484

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00027347 lncRNA downstream 471124 26296165 ~ 26299843 (-) True XLOC_013456
TCONS_00026564 lncRNA downstream 471191 26296165 ~ 26299776 (-) False XLOC_013456
TCONS_00026556 lncRNA downstream 1008629 25760060 ~ 25762338 (-) True XLOC_013451
TCONS_00027346 lncRNA downstream 1025346 25697275 ~ 25745621 (-) True XLOC_013450
TCONS_00026553 lncRNA downstream 1125304 25596239 ~ 25645663 (-) True XLOC_013449
TCONS_00027348 lncRNA upstream 273154 27054846 ~ 27066350 (-) True XLOC_013467
TCONS_00027349 lncRNA upstream 576636 27358328 ~ 27362251 (-) True XLOC_013472
TCONS_00027350 lncRNA upstream 899609 27681301 ~ 27682853 (-) True XLOC_013474
TCONS_00027351 lncRNA upstream 1020859 27802551 ~ 27819952 (-) False XLOC_013475
TCONS_00027352 lncRNA upstream 1035506 27817198 ~ 27819714 (-) False XLOC_013475
TCONS_00026567 mRNA downstream 55312 26649860 ~ 26715655 (-) False XLOC_013458
TCONS_00026568 mRNA downstream 55811 26679560 ~ 26715156 (-) True XLOC_013458
TCONS_00026565 mRNA downstream 95268 26460444 ~ 26675699 (-) False XLOC_013457
TCONS_00026566 mRNA downstream 260422 26482375 ~ 26510545 (-) True XLOC_013457
TCONS_00026562 mRNA downstream 644709 26124663 ~ 26126258 (-) True XLOC_013454
TCONS_00026571 mRNA upstream 3276 26784968 ~ 26785861 (-) True XLOC_013460
TCONS_00026572 mRNA upstream 6391 26788083 ~ 26797723 (-) True XLOC_013461
TCONS_00026573 mRNA upstream 18369 26800061 ~ 26811959 (-) True XLOC_013462
TCONS_00026574 mRNA upstream 72199 26853891 ~ 26854959 (-) True XLOC_013463
TCONS_00026575 mRNA upstream 81447 26863139 ~ 26876559 (-) False XLOC_013464
TCONS_00026563 other downstream 567578 26203303 ~ 26203389 (-) True XLOC_013455
TCONS_00026560 other downstream 865369 25855010 ~ 25905598 (-) True XLOC_013452
TCONS_00026554 other downstream 1012690 25754838 ~ 25758277 (-) False XLOC_013451
TCONS_00026548 other downstream 1254336 25515893 ~ 25516631 (-) True XLOC_013448
TCONS_00026541 other downstream 1612190 25158661 ~ 25158777 (-) True XLOC_013444
TCONS_00026577 other upstream 98780 26880472 ~ 26894703 (-) False XLOC_013464
TCONS_00026581 other upstream 355173 27136865 ~ 27136982 (-) True XLOC_013468
TCONS_00026582 other upstream 525232 27306924 ~ 27307040 (-) True XLOC_013469
TCONS_00026584 other upstream 553249 27334941 ~ 27335059 (-) True XLOC_013471
TCONS_00026588 other upstream 1539038 28320730 ~ 28324155 (-) True XLOC_013478

Expression Profile

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