RNA id: TCONS_00026575


Basic Information

Item Value
RNA id TCONS_00026575
length 1208
RNA type mRNA
GC content 0.41
exon number 6
gene id XLOC_013464
representative False

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 26863139 ~ 26894770 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGTGAGAAATGTGGAGCAGACATCAGAGCTGCCTTCAGGCCCAGTATGCTGCACCACTACAGTGATGTTTTAGGCTATCTGGACCTACACGCAGCTGTTCCTGTAGATCTTGTACTGCAGGACTCTCAGTTCAGTGTGGGCTGCCTCAACTGCAACAAGGAGGATATAATTCAGAATCTGACCTATGGCCAAAACTGGGAGCAAAACTGCCAACATTGTCATTTTAAACTCAGCATATTTGTGGAGGCGACACGTTTTCAATTCATTCAGCCGGAGACCAAAAATCAGACAGGTGCAGCTGGTCAATATCCTCGACGTTACAGGGACCCTGCAGTTCAGCAAGGAAAACCTCTTCCTGATAAAGGTGCCTGCAAGCATTTTAAACAAAGTCACCGGTGGCTAAGATTTCCATGCTGTGGTCGGGCATACCCGTGCGACGCATGCCATGATGAAGACCAGGACCATTTAATGGAGCTGGCCACCAGAATGATCTGCGGTTACTGTGCCAAAGAGCAGCCATACTGCAATGGTAAGCCGTGTGTTGGCTGTGGAGGCATGATGACAAGAGGAGCCTTTACAAGCTATTGGGAGGGCGGACAGGGCTGCAGGAACAAGATTAAGATGAACAGGAACGACCGGCACAAATATGCCAACACATCGAAAACAGTGCCAAAGAaagcacaaaaagaaaaaaagtaaagacACCAGAGGTTTTTCTCCTTTTTCTTGATCTAATTCAGATCATCAAGTCACGTTTTTTCCTCCTCGGATGATTTCACAGAGTTGTTTTTTTGCGATGTACaattcatttcaaaataaaacagcTGACAGGTTTTGCAATATTCAGCGCGAGGATCTGTGTCCactttttgtattgttttcatCTGTCTTTTTGCTTGCTGTTAGAAATCAACATTAATAATGTGTATAAATACAAGTGCaccttaatttgtaaattgttgAAATGAATAATTTCAACTTAAAATTTTGAACTTGCTAAAGGTTATAGTCATTAGGGatttttgtaacaattttaaaattaaaatcccTGGTAATCCCTTTTTCATAAAGCACCAatttaaaaagtttcaaattaTTGTTACTTTTATCCAAAATACATGTAAAGCGGTGCAATGAGCCGAATATGAAATGCAGAAGATTGCTGTTTTCCATCAGTCTAAATGAAATAAACTTgtgtaaaaagtaaa

Function

GO:

id name namespace
GO:0016567 protein ubiquitination biological_process
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0061630 ubiquitin protein ligase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050419-208 Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in protein ubiquitination and ubiquitin-dependent protein catabolic process. Predicted to be active in nucleus.

Ensembl:

ensembl_id ENSDART00000134351

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00027347 lncRNA downstream 563296 26296165 ~ 26299843 (-) True XLOC_013456
TCONS_00026564 lncRNA downstream 563363 26296165 ~ 26299776 (-) False XLOC_013456
TCONS_00026556 lncRNA downstream 1100801 25760060 ~ 25762338 (-) True XLOC_013451
TCONS_00027346 lncRNA downstream 1117518 25697275 ~ 25745621 (-) True XLOC_013450
TCONS_00026553 lncRNA downstream 1217476 25596239 ~ 25645663 (-) True XLOC_013449
TCONS_00027348 lncRNA upstream 178287 27054846 ~ 27066350 (-) True XLOC_013467
TCONS_00027349 lncRNA upstream 481769 27358328 ~ 27362251 (-) True XLOC_013472
TCONS_00027350 lncRNA upstream 804742 27681301 ~ 27682853 (-) True XLOC_013474
TCONS_00027351 lncRNA upstream 925992 27802551 ~ 27819952 (-) False XLOC_013475
TCONS_00027352 lncRNA upstream 940639 27817198 ~ 27819714 (-) False XLOC_013475
TCONS_00026574 mRNA downstream 8180 26853891 ~ 26854959 (-) True XLOC_013463
TCONS_00026573 mRNA downstream 51180 26800061 ~ 26811959 (-) True XLOC_013462
TCONS_00026572 mRNA downstream 65416 26788083 ~ 26797723 (-) True XLOC_013461
TCONS_00026571 mRNA downstream 77278 26784968 ~ 26785861 (-) True XLOC_013460
TCONS_00026569 mRNA downstream 81447 26770967 ~ 26781692 (-) False XLOC_013459
TCONS_00026578 mRNA upstream 14622 26891181 ~ 26894732 (-) True XLOC_013464
TCONS_00026579 mRNA upstream 54397 26930956 ~ 26963473 (-) True XLOC_013465
TCONS_00026580 mRNA upstream 90855 26967414 ~ 26977940 (-) True XLOC_013466
TCONS_00026583 mRNA upstream 432845 27309404 ~ 27316599 (-) True XLOC_013470
TCONS_00026585 mRNA upstream 713883 27590442 ~ 27628784 (-) True XLOC_013473
TCONS_00026563 other downstream 659750 26203303 ~ 26203389 (-) True XLOC_013455
TCONS_00026560 other downstream 957541 25855010 ~ 25905598 (-) True XLOC_013452
TCONS_00026554 other downstream 1104862 25754838 ~ 25758277 (-) False XLOC_013451
TCONS_00026548 other downstream 1346508 25515893 ~ 25516631 (-) True XLOC_013448
TCONS_00026541 other downstream 1704362 25158661 ~ 25158777 (-) True XLOC_013444
TCONS_00026577 other upstream 3913 26880472 ~ 26894703 (-) False XLOC_013464
TCONS_00026581 other upstream 260306 27136865 ~ 27136982 (-) True XLOC_013468
TCONS_00026582 other upstream 430365 27306924 ~ 27307040 (-) True XLOC_013469
TCONS_00026584 other upstream 458382 27334941 ~ 27335059 (-) True XLOC_013471
TCONS_00026588 other upstream 1444171 28320730 ~ 28324155 (-) True XLOC_013478

Expression Profile

//