RNA id: TCONS_00026578


Basic Information

Item Value
RNA id TCONS_00026578
length 823
RNA type mRNA
GC content 0.48
exon number 2
gene id XLOC_013464
representative True

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 26863139 ~ 26894770 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTATGCTAACGCAAAGGTAAACGTAGTCATTGACAGACAGCAACAGCTATAAGCACTGAAGTATTGGACAGTTTACATTGACTACAGGGTGTTTGTCGATCTAATGGAGTCAGAAAGTGCGGGTGTGGCGCAGtcacTAGATCCTAAGGATGAACCAACAACTTCACCAGTGTCAGTTGACACTAAAAAGGAAAACTCAGGCCGTGATACTGAGATAAGCAGCAAAGATGTTTCCCAAAAGGCTGAACGGGTGCAGCAATTGTGTCGCTTCTACTCTCAGGGCAGGCGATGCTATTATGGAAAAAGGTGCCACTTTCTTCATCAGAGAGCTTCAGGTGCACCAAAAGATGGAGAAAATGGTACATCTCATAAGGAGAAAGAAGCAAAAGAGCCACAGCAACAGCTAAGTGAAAACAGCCAACCCACTACAGAAGATCTTCCACCTCCATCTAACCATAAACCTGctcctgtgaggcaacagagaGCCAGAAGACCATGTCGCTACTTCCTCTCAGGGTTTTGTGCTATGGAGGATCGATGTCGTTTTTTGCATCCACAAGAGTTTCCGCCGGTGGAGGACAAACATCAAGGTCCGAAAGAGAGGAGCAGCTTCAGGCCTAACGCTCCAGCTATGCGTCCCGCTAAAAGTCACGAGCAGGTCAAACTGGCTGAGCTCACAGAAGAAGTCTGCAAGCAGCTGCGAGAAACGGAGATCGCTCAGCTGATGAAGAGATTCCCCAAAGACAAGCTCATCATCCAGGAGCGAGAAGATGGACAGCTCACTTACTACAGAGTCACAGTTGAAGCCACCGATCCTGACTGG

Function

GO:

id name namespace
GO:0016567 protein ubiquitination biological_process
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0061630 ubiquitin protein ligase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050419-208 Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in protein ubiquitination and ubiquitin-dependent protein catabolic process. Predicted to be active in nucleus.

Ensembl:

ensembl_id ENSDART00000147735

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00027347 lncRNA downstream 591338 26296165 ~ 26299843 (-) True XLOC_013456
TCONS_00026564 lncRNA downstream 591405 26296165 ~ 26299776 (-) False XLOC_013456
TCONS_00026556 lncRNA downstream 1128843 25760060 ~ 25762338 (-) True XLOC_013451
TCONS_00027346 lncRNA downstream 1145560 25697275 ~ 25745621 (-) True XLOC_013450
TCONS_00026553 lncRNA downstream 1245518 25596239 ~ 25645663 (-) True XLOC_013449
TCONS_00027348 lncRNA upstream 160114 27054846 ~ 27066350 (-) True XLOC_013467
TCONS_00027349 lncRNA upstream 463596 27358328 ~ 27362251 (-) True XLOC_013472
TCONS_00027350 lncRNA upstream 786569 27681301 ~ 27682853 (-) True XLOC_013474
TCONS_00027351 lncRNA upstream 907819 27802551 ~ 27819952 (-) False XLOC_013475
TCONS_00027352 lncRNA upstream 922466 27817198 ~ 27819714 (-) False XLOC_013475
TCONS_00026575 mRNA downstream 14622 26863139 ~ 26876559 (-) False XLOC_013464
TCONS_00026574 mRNA downstream 36222 26853891 ~ 26854959 (-) True XLOC_013463
TCONS_00026573 mRNA downstream 79222 26800061 ~ 26811959 (-) True XLOC_013462
TCONS_00026572 mRNA downstream 93458 26788083 ~ 26797723 (-) True XLOC_013461
TCONS_00026571 mRNA downstream 105320 26784968 ~ 26785861 (-) True XLOC_013460
TCONS_00026579 mRNA upstream 36224 26930956 ~ 26963473 (-) True XLOC_013465
TCONS_00026580 mRNA upstream 72682 26967414 ~ 26977940 (-) True XLOC_013466
TCONS_00026583 mRNA upstream 414672 27309404 ~ 27316599 (-) True XLOC_013470
TCONS_00026585 mRNA upstream 695710 27590442 ~ 27628784 (-) True XLOC_013473
TCONS_00026586 mRNA upstream 949044 27843776 ~ 27858123 (-) False XLOC_013476
TCONS_00026563 other downstream 687792 26203303 ~ 26203389 (-) True XLOC_013455
TCONS_00026560 other downstream 985583 25855010 ~ 25905598 (-) True XLOC_013452
TCONS_00026554 other downstream 1132904 25754838 ~ 25758277 (-) False XLOC_013451
TCONS_00026548 other downstream 1374550 25515893 ~ 25516631 (-) True XLOC_013448
TCONS_00026541 other downstream 1732404 25158661 ~ 25158777 (-) True XLOC_013444
TCONS_00026581 other upstream 242133 27136865 ~ 27136982 (-) True XLOC_013468
TCONS_00026582 other upstream 412192 27306924 ~ 27307040 (-) True XLOC_013469
TCONS_00026584 other upstream 440209 27334941 ~ 27335059 (-) True XLOC_013471
TCONS_00026588 other upstream 1425998 28320730 ~ 28324155 (-) True XLOC_013478
TCONS_00026590 other upstream 1900827 28795559 ~ 28795675 (-) True XLOC_013480

Expression Profile

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