RNA id: TCONS_00027348


Basic Information

Item Value
RNA id TCONS_00027348
length 243
lncRNA type antisense_over
GC content 0.52
exon number 2
gene id XLOC_013467
representative True

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 27054846 ~ 27066350 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AACTCATCAAATGTGCGGAAAACAAACTGTGGCTCGCTCTGACCTTCCCTTAGAATCCGAATGACATAcgtctaaaaacaaaaaaacataagaaatcagCCAGAGCTCCAAGCAGCTGCACAAGTCGGGTCTGCTTCTCCAGCTCAGCCCTCAGTCCGGTCCCACACAGACACAGCAGCACACAGAGGATCCGCTCATAACGCTGACCAAACGCCGGGTCCTGCACTGCATCCCTCAGCAGCC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00027347 lncRNA downstream 755003 26296165 ~ 26299843 (-) True XLOC_013456
TCONS_00026564 lncRNA downstream 755070 26296165 ~ 26299776 (-) False XLOC_013456
TCONS_00026556 lncRNA downstream 1292508 25760060 ~ 25762338 (-) True XLOC_013451
TCONS_00027346 lncRNA downstream 1309225 25697275 ~ 25745621 (-) True XLOC_013450
TCONS_00026553 lncRNA downstream 1409183 25596239 ~ 25645663 (-) True XLOC_013449
TCONS_00027349 lncRNA upstream 291978 27358328 ~ 27362251 (-) True XLOC_013472
TCONS_00027350 lncRNA upstream 614951 27681301 ~ 27682853 (-) True XLOC_013474
TCONS_00027351 lncRNA upstream 736201 27802551 ~ 27819952 (-) False XLOC_013475
TCONS_00027352 lncRNA upstream 750848 27817198 ~ 27819714 (-) False XLOC_013475
TCONS_00026972 lncRNA upstream 751784 27818134 ~ 27819906 (-) True XLOC_013475
TCONS_00026580 mRNA downstream 76906 26967414 ~ 26977940 (-) True XLOC_013466
TCONS_00026579 mRNA downstream 91373 26930956 ~ 26963473 (-) True XLOC_013465
TCONS_00026576 mRNA downstream 160076 26863149 ~ 26894770 (-) False XLOC_013464
TCONS_00026578 mRNA downstream 160114 26891181 ~ 26894732 (-) True XLOC_013464
TCONS_00026575 mRNA downstream 178287 26863139 ~ 26876559 (-) False XLOC_013464
TCONS_00026583 mRNA upstream 243054 27309404 ~ 27316599 (-) True XLOC_013470
TCONS_00026585 mRNA upstream 524092 27590442 ~ 27628784 (-) True XLOC_013473
TCONS_00026586 mRNA upstream 777426 27843776 ~ 27858123 (-) False XLOC_013476
TCONS_00026587 mRNA upstream 777490 27843840 ~ 27897217 (-) True XLOC_013476
TCONS_00026591 mRNA upstream 1870711 28937061 ~ 28938912 (-) True XLOC_013481
TCONS_00026577 other downstream 160143 26880472 ~ 26894703 (-) False XLOC_013464
TCONS_00026563 other downstream 851457 26203303 ~ 26203389 (-) True XLOC_013455
TCONS_00026560 other downstream 1149248 25855010 ~ 25905598 (-) True XLOC_013452
TCONS_00026554 other downstream 1296569 25754838 ~ 25758277 (-) False XLOC_013451
TCONS_00026548 other downstream 1538215 25515893 ~ 25516631 (-) True XLOC_013448
TCONS_00026581 other upstream 70515 27136865 ~ 27136982 (-) True XLOC_013468
TCONS_00026582 other upstream 240574 27306924 ~ 27307040 (-) True XLOC_013469
TCONS_00026584 other upstream 268591 27334941 ~ 27335059 (-) True XLOC_013471
TCONS_00026588 other upstream 1254380 28320730 ~ 28324155 (-) True XLOC_013478
TCONS_00026590 other upstream 1729209 28795559 ~ 28795675 (-) True XLOC_013480