RNA id: TCONS_00026583


Basic Information

Item Value
RNA id TCONS_00026583
length 1003
RNA type mRNA
GC content 0.44
exon number 5
gene id XLOC_013470
representative True

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 27309404 ~ 27316599 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGAGCGACGTTGTAACTACAACTCCCAGGAAGCATTGCGCGGGTCAGGTTAGCCACCCGCTAGCAGCTAAGCAAACGCAGAAGCAGGCAGGCGCAAGAAATGTGTATTTGACTACTGTAAGTTAAAAACCTTTGGAAATGAGTTCTTCAGACGAACCGTGTAAAGGGACAAAACGACCCGCATCTCCTGATGAAACGGGATCCACACAATGGCAGTCGGCAGATTTAGGTACAGACGAACGGAAGCAGAAGTTTTTGAGGCTGATGGGAGCTGGAAAGAAAGAGCACACGGGACGCCTTGTTATTGGGGATCACAAGTCAACGTCCCATTTCCGCAGTGgggcaGAGGATCGGAGAATGAATGCAGATCTGGAGCATCAGTATCAGCAGAGTCTGGATGGAAAGTTATCAGGGAGGAACAGGAGGCACTGCGGTCTGGGCTTCAGTGAGCCTGATGAAGTAGCTGAGAGTCCGAACGCCGCTGTGTCTGAGACGTCCAACAGTTCAGAAAACCCCCCTGAACAAGTATCAGAAGCACAGAAAGAGGAGAAACCCCCAGCATCAGACACAGAGCTGGAGAAGCAGGAGCCGCACACACACTCAAAGGAGGACAAGAAAAAGACTCTTAAAATGGCATTCGTCAAATCCACATAGATGGCCAAGTCATTTTTATCTGTTGATGCTAcaatttcttgatttttttttgtgtaattcaCTGAGTGACAGCACGTTTTTATTTCCTTTAAAACTGAACAAACTGtgctttcatttttaatgtaGTTCTATCTTTGCCATATTTTTCAGTCTTGTTGAGGACTGTGTGTTCTCTGCAAATGAAAGGCATAGTTTATACAAGAAATGAAAATCCTGTCGCAGTCTGCTCAGCCCTTTGGAGATTTTCAAGAAATTAAGGTACATTCATTTgaataattgtcattttttttgtgtattgAAAGGTGTGTGAGAATATCAATAAAAAGAACATGTGTTTTGTGATTCTAAAA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDART00000028294

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00027348 lncRNA downstream 243054 27054846 ~ 27066350 (-) True XLOC_013467
TCONS_00027347 lncRNA downstream 1009561 26296165 ~ 26299843 (-) True XLOC_013456
TCONS_00026564 lncRNA downstream 1009628 26296165 ~ 26299776 (-) False XLOC_013456
TCONS_00026556 lncRNA downstream 1547066 25760060 ~ 25762338 (-) True XLOC_013451
TCONS_00027346 lncRNA downstream 1563783 25697275 ~ 25745621 (-) True XLOC_013450
TCONS_00027349 lncRNA upstream 41729 27358328 ~ 27362251 (-) True XLOC_013472
TCONS_00027350 lncRNA upstream 364702 27681301 ~ 27682853 (-) True XLOC_013474
TCONS_00027351 lncRNA upstream 485952 27802551 ~ 27819952 (-) False XLOC_013475
TCONS_00027352 lncRNA upstream 500599 27817198 ~ 27819714 (-) False XLOC_013475
TCONS_00026972 lncRNA upstream 501535 27818134 ~ 27819906 (-) True XLOC_013475
TCONS_00026580 mRNA downstream 331464 26967414 ~ 26977940 (-) True XLOC_013466
TCONS_00026579 mRNA downstream 345931 26930956 ~ 26963473 (-) True XLOC_013465
TCONS_00026576 mRNA downstream 414634 26863149 ~ 26894770 (-) False XLOC_013464
TCONS_00026578 mRNA downstream 414672 26891181 ~ 26894732 (-) True XLOC_013464
TCONS_00026575 mRNA downstream 432845 26863139 ~ 26876559 (-) False XLOC_013464
TCONS_00026585 mRNA upstream 273843 27590442 ~ 27628784 (-) True XLOC_013473
TCONS_00026586 mRNA upstream 527177 27843776 ~ 27858123 (-) False XLOC_013476
TCONS_00026587 mRNA upstream 527241 27843840 ~ 27897217 (-) True XLOC_013476
TCONS_00026591 mRNA upstream 1620462 28937061 ~ 28938912 (-) True XLOC_013481
TCONS_00026595 mRNA upstream 2568591 29885190 ~ 29896367 (-) False XLOC_013486
TCONS_00026582 other downstream 2364 27306924 ~ 27307040 (-) True XLOC_013469
TCONS_00026581 other downstream 172422 27136865 ~ 27136982 (-) True XLOC_013468
TCONS_00026577 other downstream 414701 26880472 ~ 26894703 (-) False XLOC_013464
TCONS_00026563 other downstream 1106015 26203303 ~ 26203389 (-) True XLOC_013455
TCONS_00026560 other downstream 1403806 25855010 ~ 25905598 (-) True XLOC_013452
TCONS_00026584 other upstream 18342 27334941 ~ 27335059 (-) True XLOC_013471
TCONS_00026588 other upstream 1004131 28320730 ~ 28324155 (-) True XLOC_013478
TCONS_00026590 other upstream 1478960 28795559 ~ 28795675 (-) True XLOC_013480
TCONS_00026592 other upstream 1768459 29085058 ~ 29085174 (-) True XLOC_013482
TCONS_00026593 other upstream 1896534 29213133 ~ 29213249 (-) True XLOC_013483

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000180_01419505_01421941.mRNA True 882 mRNA 0.41 5 CI01000180 1419136 ~ 1421941 (-)