RNA id: TCONS_00027349


Basic Information

Item Value
RNA id TCONS_00027349
length 3297
lncRNA type antisense_over
GC content 0.31
exon number 2
gene id XLOC_013472
representative True

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 27358328 ~ 27362251 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tttttattatctgtttatGGTTTTACATAGTTAAATATAtcagtatataaatatacaaatgagcCTTTATAAAAACACTCAATCATAAAATATTAGATTACGaagcaaaataaaacagaacTGAATACAGTTGCTCACTAAAGGTTGATTATGAAATGCACAATAGAAACAACTGAATAATTCATCAGCATGGGAGAAGTCAGCTTGAATATGTCAATACAGGCATTTATTGACTTTACAAGAGGTAAATCACTTCACTGTAAACTGTTTTTCGCTCatcatttttctttattaactgtGAAATTTGTATTGACAGATTAGAGTGATGATTCTTGGAACGGACTACTCGGCTTGTCTTTCACCTAATGGATTCCAGTTATTTACAAAACATTCAAAAAGAGAACAGTTTTAGTAACAGCACATGCTTTTCCAAGAAATATCTCATCATAGGTAATTCATGAAGTTATGACAGAAAACAGTGCAGCATGGAAAATGCATTTGTGCTGTTTAACATAACAGCAGATAAGAATGAAAAGAACATTGAAAAGAAACATCTGAATTTTATCCCATTAATTTTGCCACACAATTCGGtctattttttgttaaatttcttAAATATGAACTGAATGTCAACATTTCCTAAAATCTTTGTTGGATATTGAACAATACTGCCACCTAGAGTTAAACTCGCATACAATCGACAGCACATATTTTAAAGTCAAGTCAGAAAATGGCTTGAGATACTggcaaaaaacatatataaaaaagaaaagaaaagactgAACTTATTATTtagtgtttattattaaaatcacactAGACTGAAATAAGACTATAAGGCTTCAGAAAGTCTCTTTAGAAAATAAACTATCATTTGGAATGTTAAAAATGCTtagattttatataataatacttACATAAAATAAGGGGCATGATAAATATGTTAAGTGTTCACGCAAATACAATGTATTTTGATGGTCtacttaatataaaaatacaaaatagatTTCTGaagttacaaaacaaaacaaaattgagAAATTGTTGGAAACGTTTCCTAGATATTTTTTAGACAATCTACCCTTCCAGAcaatatataaatgtacatattaaagcatacatttaaaataaaaactgagattaaaaagacttaaatatgCCCATTAAAATAAgctgatattaaaaaataaacccaATGCCACTTGAACTCCATTActattggatttatttatttatttttttgtggaatGTGAAAGTGATTTGTGttgtttaaaaagtattaaaatgttggtaacattttacaatgagGTCTCATCGGTTATTGCAACAACAaaccaaaaatgttatatatatttttataattattttttggtCACTCAAAAGAAAATGTTCAGAGCATTAACAAATGCTAAAATGTGTTAGTAAAAGAAGCTCAAATTACCACTGACTAAGattaaaaaatgctgtaaatacaaaaagaagaaattaaaataacttattattattattgataacaaTTCTAAAGTATTGCAAACACTGCCTTCGtattaaagtgttagttcatcccaaaataaaattgtcatccattttattagaaatgtgttcattttcaaaacaaaGATGAAGATATTTTGCAAACATCTCTGAACGTTGATCCATCCAATACTTTCAAACTGCTTcaatacattcaaaataaatctattaataaagctggggtccattcttcgtacctcgcttaaatgatctaagatgatttggcagatcctggatctttttatctcgataactgatctctcgctaatttggttcttcaaacaagttcgcgaatcagattagaatgtctggataaactgatctgagatcgctgtatgtgttgtaaaggacagatctatcgatcctcgaaatcatgatcagcaatgcaatggttggctgacggcacagcagcgtaatgacatcatctgattaatattcaattatccatgtgagcaaaattacatcaaattagcagtaaatggtttgttaaatatgacacgcaataaccttccacatttgttgtgagctgcaggctttacactttcatgtgtcaagtgtattcatcatgtatttcaatgcaaatcaatgtatttagatagattttcattattatagtagctgtttttttaatcgggttaaagaataactggttgtttacaaaagcattttgatattggtaaaggcgtctgcaacttttgtgaagcattaaatcactggcatattaactatcaaaaaatgtttatgactgcataaatgtattattgcttttttgtttgtttttttaaagtcatatattgtgcatttctattatacacagtTTGTAcaaaagcgatctaaaaagttcatatcaataagttttctctgcaccaccaggtggcagtctttgtactttcatttcgagggtgcagattgtataagttttatttatttattttattaataactataactttatatatttagttaaaaaatatttaccattttcccaagtgtatataactactactgtaagaaaatagcagaattcggaacatactttctgtattatctttgcttaaactgagctgatctaatcctgttaaaatgaattgaacctgctcccgatcaggtttgacctagcagaactgttgctatgacaacaactctcggatcagctttaaagaacgaaacgatcctggatcgtgtcaaatcgtcaatatccaaatccaacttgagtaatccacgtacgaagaacgaaccTCTGTTTTATGCCAGTCTTTTGAAGAGAcatgttttattgattattttcacGAAACTTTAGCTTCCATGACCACTTTATTCATTGTAAACTttgatcaacgtttatatgtgtGGTGAAAAAAAGCCTTAAATTAAAACAATCCTCATACAAAACTATtagaattcatttaaaaaatgtcttataaCACTGGAAGTGATGATACAAATATTCttgatttgatgttttatttgacCTTTGTCAGGAGACAAACTATttcaatgccttcctcagtgtgtaaAGTAAAAAAGAACACAATTGTGTCTGTTTCCTGATGAATGTCAAATAAAACGTGAAAACAAGAAGACTAGTATGACTGCGGATCATTAATTCCACCCCTTTCTATGGCATCAGAGCCCAGAACCTGAGGGAAGATGTTGAATCGTGCCTCATGTTCGCTGTAGTCCTGCTGGGTCTCGCTGTACTGTACCATCCTATTCTCGTTGGACAGCAGCAGCTTTGGATGGACTGTATCAGGATCTAGAGTT

Function

GO:

id name namespace
GO:0022603 regulation of anatomical structure morphogenesis biological_process
GO:0098803 respiratory chain complex cellular_component
GO:0005746 mitochondrial respirasome cellular_component
GO:0005747 mitochondrial respiratory chain complex I cellular_component
GO:0030964 NADH dehydrogenase complex cellular_component
GO:1990204 oxidoreductase complex cellular_component
GO:0045271 respiratory chain complex I cellular_component
GO:0070469 respirasome cellular_component
GO:0098798 mitochondrial protein-containing complex cellular_component
GO:0098800 inner mitochondrial membrane protein complex cellular_component
GO:0008201 heparin binding molecular_function
GO:0030274 LIM domain binding molecular_function
GO:0001085 RNA polymerase II transcription factor binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00027348 lncRNA downstream 291978 27054846 ~ 27066350 (-) True XLOC_013467
TCONS_00027347 lncRNA downstream 1058485 26296165 ~ 26299843 (-) True XLOC_013456
TCONS_00026564 lncRNA downstream 1058552 26296165 ~ 26299776 (-) False XLOC_013456
TCONS_00026556 lncRNA downstream 1595990 25760060 ~ 25762338 (-) True XLOC_013451
TCONS_00027346 lncRNA downstream 1612707 25697275 ~ 25745621 (-) True XLOC_013450
TCONS_00027350 lncRNA upstream 319050 27681301 ~ 27682853 (-) True XLOC_013474
TCONS_00027351 lncRNA upstream 440300 27802551 ~ 27819952 (-) False XLOC_013475
TCONS_00027352 lncRNA upstream 454947 27817198 ~ 27819714 (-) False XLOC_013475
TCONS_00026972 lncRNA upstream 455883 27818134 ~ 27819906 (-) True XLOC_013475
TCONS_00027353 lncRNA upstream 842093 28204344 ~ 28221748 (-) True XLOC_013477
TCONS_00026583 mRNA downstream 41729 27309404 ~ 27316599 (-) True XLOC_013470
TCONS_00026580 mRNA downstream 380388 26967414 ~ 26977940 (-) True XLOC_013466
TCONS_00026579 mRNA downstream 394855 26930956 ~ 26963473 (-) True XLOC_013465
TCONS_00026576 mRNA downstream 463558 26863149 ~ 26894770 (-) False XLOC_013464
TCONS_00026578 mRNA downstream 463596 26891181 ~ 26894732 (-) True XLOC_013464
TCONS_00026585 mRNA upstream 228191 27590442 ~ 27628784 (-) True XLOC_013473
TCONS_00026586 mRNA upstream 481525 27843776 ~ 27858123 (-) False XLOC_013476
TCONS_00026587 mRNA upstream 481589 27843840 ~ 27897217 (-) True XLOC_013476
TCONS_00026591 mRNA upstream 1574810 28937061 ~ 28938912 (-) True XLOC_013481
TCONS_00026595 mRNA upstream 2522939 29885190 ~ 29896367 (-) False XLOC_013486
TCONS_00026584 other downstream 23269 27334941 ~ 27335059 (-) True XLOC_013471
TCONS_00026582 other downstream 51288 27306924 ~ 27307040 (-) True XLOC_013469
TCONS_00026581 other downstream 221346 27136865 ~ 27136982 (-) True XLOC_013468
TCONS_00026577 other downstream 463625 26880472 ~ 26894703 (-) False XLOC_013464
TCONS_00026563 other downstream 1154939 26203303 ~ 26203389 (-) True XLOC_013455
TCONS_00026588 other upstream 958479 28320730 ~ 28324155 (-) True XLOC_013478
TCONS_00026590 other upstream 1433308 28795559 ~ 28795675 (-) True XLOC_013480
TCONS_00026592 other upstream 1722807 29085058 ~ 29085174 (-) True XLOC_013482
TCONS_00026593 other upstream 1850882 29213133 ~ 29213249 (-) True XLOC_013483
TCONS_00026594 other upstream 1945274 29307525 ~ 29307641 (-) True XLOC_013484

Expression Profile

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