RNA id: TU55445


Basic Information

Item Value
RNA id TU55445
length 2556
lncRNA type read_through
GC content 0.49
exon number 2
gene id G49619
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 45476563 ~ 45479422 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gttcaacttaataaaaaaacatgtttccccatctcaagaggttaaatgaAAAACAAAAGATAATAGCAAGTGCCTATTGAGTGGCAAGTAAAGTAACCAGGTTtattgtaacagggttgacgatttcatcttaAGTCAGCCATGAATCCTCTTGTGAGAGGGTGAATGGAGGCTTGTTTTGTGCAACAGGGAGGGTCAAATGAATGCAAGCTTAAAAAAAAGgaaattgttaaaaaaaattctagcctgtctatcagTGGGTGACAGGGTTGACGTGTCATGCTCAACCTACAAGAGTAGAATCAGCTctcctgcttttacactatgatttgactataagatgttcaatgtttctccTTTTTATGTTccaaaaggaatagtttcaccatattacaacgagagttcagttcatgtaacagggttgaccttaaaatgagggacattttttattttattttttttaccttaaaaTAAATCACAAATCTCATGAATTTCAATAATAATATTCAGAAATGACTTtgacaaagcaacaaaataactagggctttcaATGAAGGTGAAAACTTGGATaaatgttggggttaagtgggttaaaatcacAGGAGGTACATGTCAAAATACagaattttggcactttagcaagtctttagGCATATTTAAAACCAGATGCATTGAATTATCAATGTGGTCTATATCATTTAATTTAAGAGTCTTTTAAAATTCCATATTTATGCACAATTTCTTCTTCAAATATCAAAAGGATGCAAAGGGGACTCATTTCGTGGAACAACCCATTACCTGGACACATCCATGATGCAAACAAGGCACTAAGACATACTGCAAACAAAACACACCAACACTTAATACAGCTAATTTGTATATGACCAATAAGAAACAGTTTTTTCTATGTTTCAACACATAATTTGCATATAATTGAATAGGCAGATGTAGTCCTTTAAGTAAGTCCCTTTAACAGTCACCAGAATGGAGGATCGCTTCTGTAACAGAATAAATACTAAGGGAAGCCTGCTCCCTGGGAGTTAGGTAGCCCAGTGAAGTGTCCATGCCCAGGTATAACCTGTACAGTGTGAGGATCCTATTGCAGGTTAATCTGCATCAACCCAGCACATCACAATATCTCACTAGGGtttcagagaggagaggggggctgGAGCTGTTCCAAACATCAAAGGCAGACCCATACTGGTCATAAGGGAAACCACCCTCTGACCTAATCCTGTAGACATGGGGAAGATAGAGAGCAAACAACCAGCCCAAGGTAATCTCAACCTGGTGGGAGAAACCACCAGCCTCGACCATGACCAATTCCCAACACTTCAATTTCTCAACcctgtgggggaggagagagagcaagccACTAGCCCCAGACATACCCAGTGAATCCTTAACAAGCCCAACGATTTTGTCCCTCTATCCAAATACTGTGTGGGGATAGCTGCCGCCAGGACCCAGGAGTACCTCCTGTTTCCCTCGACCCAGAGGACATGTTCCAGCCCCACAGCCCTCAACGAGATCTTCCTAATAACATATATTACCCAGAGCAGCCACCTCCACATGACCGACTCCTCCAACTgcaccacaatgacaaagcagcAGCGCATTTTTCTGGGTGCTGACTGGGCGTGGGCTGTGCTGGAGAGGCCCCCCAAGAACCCCTGCATCTAGATTGCCGTGCAGATCCTGCACCTGACAGAGGGGGGAGGGACGGCAGAGGACTTCCCCCCCGGAGGTATATACTGAATACATGCAAGATGGCCAAGACGGAGTCTGCTAATAGGAACAAGGCAGAGAGGATGGTGTATTTTTGCACCTCCATCGGTAATGACTGctactccctctttctcctattTGGCCGCAAGGGCGACTCTGGCAACATCTATGGGGTGCTGAGCAACAAATGTCACAATGCTATAGGAAGAATAAGAACAACCGGGCACTCATTGAGAATTTCTTTAAAAGGGTCCAGGTTCTTACGCCCACAGGAACGCTTACAGGCTTTCGTCACCAAGAGAGACGGTGACCCTTTAACTCTGCTCATCAAGTTTACCTGACCAGTATGATCGATAACCGTGCAACCATTTGTTACATTTCTTTGTGTCTATTGTAGTGTTTCAAATGGGGGGGAAGGACTGTTGTGCTTGGTGGGTTTATGCTTGCCTGGGACTCGGGGACCCAGTGTGCTGAAATTGGCCTGTGTCCATGTCTCGTGTAAACTACTGACCCATGACTGCTGACAGCTGCTCACACCCTTGTGTATAGTATTTATTTTAATGGGCTTAACACTTCACTGGCATCGCACCAGTGTGGAAATTCGCTTATCACTACCAAATGACATTAAAACCtttctacagcatacaatacagAAAATATGATTGGCCAtaaaatatttttgtattttctatgaTGGATTTAATGACTGATCACATTGCGGTATCTTCGCCCATAACATGATTCTAAGTCAATGACTGTTCATTTGATTAAGGTGGATTATTTTTTGTTAAAACTAGTGAAACAAAAatggaggagaaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU55261 lncRNA downstream 24959 45435672 ~ 45451731 (-) True G49459
TU55378 lncRNA downstream 94552 45360643 ~ 45382138 (-) True G49560
TU55373 lncRNA downstream 117139 45339225 ~ 45359551 (-) True G49556
TU55372 lncRNA downstream 137540 45338855 ~ 45339150 (-) True G49555
TU55257 lncRNA downstream 152118 45323340 ~ 45324572 (-) True G49456
TU55595 lncRNA upstream 219734 45699156 ~ 45699878 (-) True G49759
TU55613 lncRNA upstream 244737 45724159 ~ 45724388 (-) True G49777
TU55653 lncRNA upstream 312730 45792152 ~ 45793197 (-) True G49817
TU55710 lncRNA upstream 400369 45879791 ~ 45880234 (-) True G49872
TU55746 lncRNA upstream 401648 45881070 ~ 45939772 (-) True G49907
XM_036978367.1 mRNA downstream 62026 45325909 ~ 45414664 (-) False LOC110523755
XM_021602772.2 mRNA downstream 62029 45325909 ~ 45414661 (-) False LOC110523755
XM_021603012.2 mRNA upstream 152749 45632171 ~ 45680658 (-) True LOC110523892
XM_021603039.2 mRNA upstream 250813 45730235 ~ 45866692 (-) False LOC110523903
XM_021603048.2 mRNA upstream 250813 45730235 ~ 45867098 (-) False LOC110523903
XM_036978487.1 mRNA upstream 250813 45730235 ~ 45867098 (-) True LOC110523903
XM_036978506.1 mRNA upstream 508524 45987946 ~ 46025203 (-) False LOC110523913
TU52237 other downstream 2347661 43038728 ~ 43129029 (-) True tspan9a
TU47067 other downstream 6454665 39021805 ~ 39022025 (-) True G41868
TU45924 other downstream 7284954 38187488 ~ 38191736 (-) True G40768
TU45886 other downstream 7350965 38125280 ~ 38125725 (-) True G40732
TU45214 other downstream 7759657 37716540 ~ 37717033 (-) True G40079
TU55610 other upstream 241383 45720805 ~ 45721124 (-) True G49774
TU55801 other upstream 469536 45948958 ~ 45949951 (-) True G49962
TU57229 other upstream 1585352 47064774 ~ 47119033 (-) False G51214
TU57327 other upstream 1809517 47288939 ~ 47289681 (-) True G51285
TU57725 other upstream 1898219 47377641 ~ 47378543 (-) True G51649

Expression Profile