RNA id: TU55848


Basic Information

Item Value
RNA id TU55848
length 2445
lncRNA type antisense_over
GC content 0.39
exon number 1
gene id G50008
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 45987974 ~ 45990418 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TATTCCACCCAAATTCTGCATAACTACATCCAACTGCATTCTGTATGACATGATTCAAACTCCTGTGCCTTCAGAAGCCTCAGGGGCCTGTCGTCACATTCCACCTCAGAAACGTGTCGGATGAAAGATGCATCAGCAGTGCATCGACTTGTGTCAACTCATTTGTCCTGTTCCTTTTGACTGTTTTTAATCAATCATATTTTCCATTCATTAGCTTGAAATATGGGTGAACATACCAATGATATTATTTGAAACAAACTGGAGTACCTTTTGTCTTTTTAGCGATACaagtgataatgatgatgattccaagcaccaaccAAATGGTTTGTGCTCGACAAAGGCCAAGATGTTAAATGTATAAGCTACATTATGATTCCTTTTCAAGTCTCATCCACATTGTTGAGTGAAACTTTTTATTGTGAGTCAAATCTGGTAgaggaatttttttttttacaaatgtatgaGTAGAGGTGAAAAGGAAGGTAGTGTTACAGAGCACATCATATAGATTCTCAAAAAGGTATTTGCGTTTCAGCTTTTTAAAATGTCATCATATTTCCTGTGGAATATTCGGCATACATTTTTGGAACTACATCTCCCAAAAATAATTGATTCATCATTTTGTAGAAAAATAGTCAAATCACATTTGTCAAACTGGGTAGCAACAGTTGAGATCCATTTAAAGACACCTACCCAGTCAAACGAATGGACTAGATAATGACTTTGCATTTGCGTCATTATCATTGAGTATAGCTCAAAAAATTTgtaaaatcaaaaaaaaaaagaaatctaaTATTTCAAATATGAATATTGCATGCTTAACAAAGTCTTCACATTGATACTGCAGTTTTGTAGAGCCAGGTAATCTAAGAAAGTGCTATGTTCATCTAATCCATACTAAACTAATGTCGTACCTACATTGTGATAGACCAAACTGTATTTTCTATTTCCAATTATATCACATTGATTAGACCTTATTCTGTTACTATTTCGAAAGTGTGAAAGCTTTTCCAACGCTATGTCATTATCAGATATGCAATGTCAGCGCAGTAATACACATCGCCCAatctggtaacatgttttggtGGCTGTTGATCTACACCTAACTGTACTGATGAACTGAACTAGTAGCATGTACAGTACATGGTAAAGGGCCCTAGCCGTCATGTTTTCCTTGTTTTGAGATCCTGAAAACTCAGTAAATACTAGTAAAACATAGAATTATCCATCATTTTGCTTATGTTATGACCGAGTGAGTAATTTTGCATATACCAGCATATGCACCGACATGAATACATTCGAAATGTGCTATTTGTTTTACACTATGTGATCCTGTGTTGGTACCCTTTGACAAATTAGAAAATAGGATTGAAAGCAATCTGACCATCCTTCAAATTAAAAAATGCAGTAAAGCAAGTCAACTTCTAAAGAAAATGGTGTCAAAATATACAAGcaaatctctcgctctctctctctgtctctcacggcTGGCACAAGTCTCTTCAATAATTAATGTCTTCACGTTACATCATATATTTAATCAACACACCTGTGGCCCATCCGACACCCATCTTCCTATACTACTCTGTCCAGTGAAAAGGATAGGACCCAATATAAGTCAAAATCTCCAAATACAAAACCGTAACACGTGAAGAACTATTGTAAGATCATTTGTGTGCGGCAATATACGACTCTATTCATCTTTTCATAATCGTGGTCAGTAGACAAACTTCATAAGCATATGAATAACAGAACAGGTGAccgttgtttttttttgtgtttttttactGTAATCTGATTGGGTAAAGGTCATGAGTACATTTGaaaaatacagaatgacatagCCACTCACACTAAAGCCTTTCTTCGCAcggttttttcttcttttttttctcttttgccTTTTAATAAGGTGAGCGCACAACAGACACTCACTCAATTATTTCCCCCTTTTAAAAAGAAGTAAAGCATGAAAGTAAACGACAAAGCACACGAATATCCAACAACTGAAACTGAGAGACTaagttagtttttttttttaaaatacacACAAACCACCAGTAGTAGGTACAAGTCTTCTGTCCATTAAGGAATTTGGAGAATCAAAAAGCACAGTTAGTTAGTCCAGCTTTGCCATCCCTGTCGTTGGATGGTGTGGACCAGGGTAGAGGTTGTATGTGGCACTACCATGGGGGATAGGGCTGCTGTACTCTAGTCTAGGCCATCCTCTGCTGGCTGATGGCAGTTGACATGGAGGCTGTGAGGTCTGGGAGACCTGGGGctcagagagcagagcagagagggcaTGGCTGGGCTGAGGAGGCAGGCCAGAGGCCAGTAGCCAGGGGCCAGTAACCAGGGCCAGGGGAGAAGGGCAGGGCAGGGTGCTCGAGTCCAGGGGTACTCAATGTGAGGGAGGGAGGCCCTACTGCCTAACCAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU55839 lncRNA upstream 9476 45978266 ~ 45978498 (+) True G49999
TU55816 lncRNA upstream 22443 45965217 ~ 45965531 (+) True G49977
TU55119 lncRNA upstream 256352 45730241 ~ 45731622 (+) False G49335
TU55071 lncRNA upstream 284854 45654397 ~ 45703120 (+) False G49288
TU55070 lncRNA upstream 284854 45702506 ~ 45703120 (+) True G49288
TU55849 lncRNA downstream 644 45991062 ~ 45991429 (+) True G50009
TU55854 lncRNA downstream 3534 45993952 ~ 45994217 (+) True G50011
TU55855 lncRNA downstream 3941 45994359 ~ 45994892 (+) True G50012
TU55856 lncRNA downstream 4650 45995068 ~ 45995681 (+) True G50013
TU55857 lncRNA downstream 5932 45996350 ~ 45997699 (+) True G50014
XM_021602882.2 mRNA upstream 516461 45466496 ~ 45471513 (+) True LOC110523825
XR_005051863.1 mRNA upstream 533147 45452036 ~ 45454827 (+) True LOC118964647
XM_021602869.2 mRNA upstream 541561 45427670 ~ 45446413 (+) False LOC110523812
XM_021581733.2 mRNA downstream 151588 46142006 ~ 46159522 (+) False wt-t1a
NM_001124294.1 mRNA downstream 151603 46142021 ~ 46158684 (+) True wt-t1a
XM_036978570.1 mRNA downstream 259301 46249719 ~ 46266640 (+) False LOC110523948
XM_021603124.2 mRNA downstream 260654 46251072 ~ 46266640 (+) False LOC110523948
XM_021603161.2 mRNA downstream 260654 46251072 ~ 46266640 (+) False LOC110523948
TU55125 other upstream 251194 45735053 ~ 45736780 (+) True G49335
TU54914 other upstream 569794 45414706 ~ 45418180 (+) True G49142
TU54730 other upstream 841334 45145278 ~ 45146640 (+) False G48976
TU54725 other upstream 841841 45145278 ~ 45146133 (+) False G48976
TU54641 other upstream 915545 45071354 ~ 45072429 (+) True LOC110523657
TU55851 other downstream 1855 45992273 ~ 45992891 (+) False G50010
TU55850 other downstream 2087 45992505 ~ 45992891 (+) True G50010
TU56623 other downstream 867490 46857908 ~ 46861464 (+) True LOC110524042
TU56739 other downstream 1236828 47227246 ~ 47258898 (+) True LOC110520864
TU58177 other downstream 2016256 48006674 ~ 48024958 (+) True G52080

Expression Profile