RNA id: TCONS_00026586


Basic Information

Item Value
RNA id TCONS_00026586
length 969
RNA type mRNA
GC content 0.39
exon number 8
gene id XLOC_013476
representative False

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 27843776 ~ 27897217 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAGACTCTGCTTGCTTCTGACAACCTGGCCAAAGTGCAGAAAGACAGGCAGTTTGTATCAGATGTGATCAATGCTTTATTGGAGGAGCTGCAGAAGAAAAACAATTTTCAGAGTCTCTTTTCTGCAGTGGCAGAGGAACGGAAGAAGAAAGCTGAGCTTCTTGACATAATAAACAGGGAGGAAGAAGGTCGTCGCCAGATTAAAAAACTGCAAAAGCAGTTACTTGACATTCGCAAAGAAAAAACAGAGGAGTGTGAGAGGCTTGAGGAAGAGGTGGCCATCCTAAAAGACCAGGTACAGGACATGAGGGTGAGGACAAACCAACAAGGGAAATTTGTGAAGAGCTGTGCTGAACAGCTGGTCTACCAGGAATCAAAGCACAACAGTTACAAAGAGAATGAACTAGAAGATGAAGTTAAGATGCTTCAAGAGAAAATTGAGGAGGAAAAGAATGTCCACTTTGAAACAGAGGCCTTcctaaaacaacaacatgcaAACTTAAAGCAGAAGTTACAGTATTGGATCCATCGTTATGAAAAGGACATGGAGGAGAAGGAGCAAGAAATCACTGCTCTGCAGAATAAAAGAAACAGCAGCCAGACACGAATTCAAGACCTATCTAAAAAGtgcaaagACATGGAGAATGTTGTCATTGAAGACAGGATAGAGAAGGAGCATTTACGAGCCCAGATGGAGAAAGAGCAGAGGGAAAAAAATGCAGCAACAAAGATCCAGGCCTGGTGGCGGGGGACTCTTGTTCGCAAAGGACCACGTTCCAAGAAAGCAGATAAATCCAAGAAAAAAGATGGGAAAAAGGGCAAAAAGAAGAGGAAGTAATGACTGTCACAACAAACATTTTAGTGgcagtaaatacataaataaataaataaataaataaataaatatttatgcacataaattaaaaaataataataataattatcatttggAATATAATTGTATGAttag

Function

GO:

id name namespace
GO:0030154 cell differentiation biological_process
GO:0007288 sperm axoneme assembly biological_process
GO:0044782 cilium organization biological_process
GO:0060216 definitive hemopoiesis biological_process
GO:0031514 motile cilium cellular_component
GO:0042995 cell projection cellular_component
GO:0005856 cytoskeleton cellular_component
GO:0036126 sperm flagellum cellular_component
GO:0005929 cilium cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005516 calmodulin binding molecular_function

KEGG:

id description
ko04990 Domain-containing proteins not elsewhere classified

ZFIN:

id description
ZDB-GENE-050419-109 Predicted to enable calmodulin binding activity. Acts upstream of or within definitive hemopoiesis. Located in motile cilium. Is expressed in blastomere; brain; and pleuroperitoneal region. Orthologous to human IQCG (IQ motif containing G).

Ensembl:

ensembl_id ENSDART00000142068

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00027351 lncRNA downstream 23824 27802551 ~ 27819952 (-) False XLOC_013475
TCONS_00026972 lncRNA downstream 23870 27818134 ~ 27819906 (-) True XLOC_013475
TCONS_00027352 lncRNA downstream 24062 27817198 ~ 27819714 (-) False XLOC_013475
TCONS_00027350 lncRNA downstream 160923 27681301 ~ 27682853 (-) True XLOC_013474
TCONS_00027349 lncRNA downstream 481525 27358328 ~ 27362251 (-) True XLOC_013472
TCONS_00027353 lncRNA upstream 346221 28204344 ~ 28221748 (-) True XLOC_013477
TCONS_00026589 lncRNA upstream 462607 28320730 ~ 28323786 (-) False XLOC_013478
TCONS_00027354 lncRNA upstream 743470 28601593 ~ 28603115 (-) True XLOC_013479
TCONS_00027355 lncRNA upstream 1539817 29397940 ~ 29403016 (-) True XLOC_013485
TCONS_00027356 lncRNA upstream 2894361 30752484 ~ 30753423 (-) True XLOC_013493
TCONS_00026585 mRNA downstream 214992 27590442 ~ 27628784 (-) True XLOC_013473
TCONS_00026583 mRNA downstream 527177 27309404 ~ 27316599 (-) True XLOC_013470
TCONS_00026580 mRNA downstream 865836 26967414 ~ 26977940 (-) True XLOC_013466
TCONS_00026579 mRNA downstream 880303 26930956 ~ 26963473 (-) True XLOC_013465
TCONS_00026576 mRNA downstream 949006 26863149 ~ 26894770 (-) False XLOC_013464
TCONS_00026591 mRNA upstream 1078938 28937061 ~ 28938912 (-) True XLOC_013481
TCONS_00026595 mRNA upstream 2027067 29885190 ~ 29896367 (-) False XLOC_013486
TCONS_00026596 mRNA upstream 2030836 29888959 ~ 29898369 (-) False XLOC_013486
TCONS_00026597 mRNA upstream 2031285 29889408 ~ 29898351 (-) False XLOC_013486
TCONS_00026600 mRNA upstream 2064816 29922939 ~ 29925717 (-) True XLOC_013488
TCONS_00026584 other downstream 508717 27334941 ~ 27335059 (-) True XLOC_013471
TCONS_00026582 other downstream 536736 27306924 ~ 27307040 (-) True XLOC_013469
TCONS_00026581 other downstream 706794 27136865 ~ 27136982 (-) True XLOC_013468
TCONS_00026577 other downstream 949073 26880472 ~ 26894703 (-) False XLOC_013464
TCONS_00026563 other downstream 1640387 26203303 ~ 26203389 (-) True XLOC_013455
TCONS_00026588 other upstream 462607 28320730 ~ 28324155 (-) True XLOC_013478
TCONS_00026590 other upstream 937436 28795559 ~ 28795675 (-) True XLOC_013480
TCONS_00026592 other upstream 1226935 29085058 ~ 29085174 (-) True XLOC_013482
TCONS_00026593 other upstream 1355010 29213133 ~ 29213249 (-) True XLOC_013483
TCONS_00026594 other upstream 1449402 29307525 ~ 29307641 (-) True XLOC_013484

Expression Profile

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