RNA id: TCONS_00026588


Basic Information

Item Value
RNA id TCONS_00026588
length 1805
RNA type processed_transcript
GC content 0.38
exon number 4
gene id XLOC_013478
representative True

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 28320730 ~ 28324155 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

cccagccggcacacgaccgaccttcaacgttgaaatatggttgaaataaggtcagatgtgttttgaacgttgaaataatgttgacagaacgtttaatgttgaacggttgaaaaacagcctgcatatgacaaggcttcaacgttgaaatgtggttgaaaatacgtcagttgttgttttaatgttgaaacaatgttgaatgataaatggttgaagaaagttacagaaatccttgtacaaatcaacgttgacatttttttatcatgatctgtatgttgaattaacgtcatggcttcacccaatattcaacatgtttggttaccatggtatcggaggactcggcgcacgcggccacgcgcagcgcttcacttcacttaattacgaacacctgacctgcagtgcagcagaattcagagacatgtaacttactccagagacgcactaacttgcacagcattgaatggaaaaggctttgtccatgtccagttgagggCATCAAGAACACGCAGATAGCCTAAAtgtgtcagcctggacagactgcagttctgctactCCATGCtaaggcttttgtatggatgtcttgaCTGCTAcagtgttctctaaaggttttctggaagctccatttgagggcatcaaggacatactgatggcctaaaccagtgtcagcctagacagacagacatctattgcagttctgctacacaagaccaaactctgcttttgtatggatgtctgactagtacggtgttctctaaaggtataactggagcaaaacaatagcatccgttacagtgaaatttgtgttcataaaagatagtgatatatgtgtaacaggtccagtacatttgtcataaaggttaaatcacagtaagtactgtaaaaataacttgtttgcctttgccacaacaggtcatggtgtgtgcatactgctcgtagtaaacacacacgctgatctgatgcgggagagatatgcgcaaacacatttgtatttactgttttgttttgcctcactaaagtgttgttggagcttggtatgttcacagttgaaatcactgaagtcacatggaacgttttgacaatgtgttttgtgccttatcttgacaatgaccatcttgggaccattgctgtctgtagaggatgaggcatttaatctaaaatattttagtttgtgttctgaagattaacaggtctctgggatgacacaagtaattaataacagaacctatatgaacacttaatgtgacatgtaatagtgaaatagtggtcctacattcacaaatgtgagccattattataagacccctgtaaacatgcaatttttatgatactaataataatggaataacaaattgctattactgttgtgtttgtgagagagaatcaaaccatatattctacacattttcttgatgatttactgaaatatttgtctatgttccactgtcacaggtgctcagttttgctgcagtaatgctaaacacaatagatgtactttatacaaaaaaaaaaaaactactaaatatttagcatgcagacctgcaaagtgaaggagtaatgtcaggtttagattatagcatgagttttcactattgtgaaagtgaagccattcattcacaatgaattggaatagCAAACCTCGTTATTTATTTTGTAggaaactcacctggtgtttgagaaataaatatgtatttaagtgctagactgatatagatgttttagtgttttacacttgattctttgtccccagtgccatcttttacctcaagtgtttctctcaacctataaaacctcaaacagatgtaatgtat

Function

GO:

id name namespace
GO:0051301 cell division biological_process
GO:0005634 nucleus cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDART00000133923

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00027353 lncRNA downstream 98982 28204344 ~ 28221748 (-) True XLOC_013477
TCONS_00027351 lncRNA downstream 500778 27802551 ~ 27819952 (-) False XLOC_013475
TCONS_00026972 lncRNA downstream 500824 27818134 ~ 27819906 (-) True XLOC_013475
TCONS_00027352 lncRNA downstream 501016 27817198 ~ 27819714 (-) False XLOC_013475
TCONS_00027350 lncRNA downstream 637877 27681301 ~ 27682853 (-) True XLOC_013474
TCONS_00027354 lncRNA upstream 277438 28601593 ~ 28603115 (-) True XLOC_013479
TCONS_00027355 lncRNA upstream 1073785 29397940 ~ 29403016 (-) True XLOC_013485
TCONS_00027356 lncRNA upstream 2428329 30752484 ~ 30753423 (-) True XLOC_013493
TCONS_00027357 lncRNA upstream 2636017 30960172 ~ 30961069 (-) True XLOC_013495
TCONS_00026613 lncRNA upstream 2725334 31049489 ~ 31051597 (-) True XLOC_013496
TCONS_00026587 mRNA downstream 423513 27843840 ~ 27897217 (-) True XLOC_013476
TCONS_00026586 mRNA downstream 462607 27843776 ~ 27858123 (-) False XLOC_013476
TCONS_00026585 mRNA downstream 691946 27590442 ~ 27628784 (-) True XLOC_013473
TCONS_00026583 mRNA downstream 1004131 27309404 ~ 27316599 (-) True XLOC_013470
TCONS_00026580 mRNA downstream 1342790 26967414 ~ 26977940 (-) True XLOC_013466
TCONS_00026591 mRNA upstream 612906 28937061 ~ 28938912 (-) True XLOC_013481
TCONS_00026595 mRNA upstream 1561035 29885190 ~ 29896367 (-) False XLOC_013486
TCONS_00026596 mRNA upstream 1564804 29888959 ~ 29898369 (-) False XLOC_013486
TCONS_00026597 mRNA upstream 1565253 29889408 ~ 29898351 (-) False XLOC_013486
TCONS_00026600 mRNA upstream 1598784 29922939 ~ 29925717 (-) True XLOC_013488
TCONS_00026584 other downstream 985671 27334941 ~ 27335059 (-) True XLOC_013471
TCONS_00026582 other downstream 1013690 27306924 ~ 27307040 (-) True XLOC_013469
TCONS_00026581 other downstream 1183748 27136865 ~ 27136982 (-) True XLOC_013468
TCONS_00026577 other downstream 1426027 26880472 ~ 26894703 (-) False XLOC_013464
TCONS_00026563 other downstream 2117341 26203303 ~ 26203389 (-) True XLOC_013455
TCONS_00026590 other upstream 471404 28795559 ~ 28795675 (-) True XLOC_013480
TCONS_00026592 other upstream 760903 29085058 ~ 29085174 (-) True XLOC_013482
TCONS_00026593 other upstream 888978 29213133 ~ 29213249 (-) True XLOC_013483
TCONS_00026594 other upstream 983370 29307525 ~ 29307641 (-) True XLOC_013484
TCONS_00026598 other upstream 1571456 29895611 ~ 29898361 (-) True XLOC_013486

Expression Profile

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