RNA id: TU57117



Basic Information


Item Value
RNA id TU57117
length 232
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G51123
representative True

Chromosome Information


Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 46814594 ~ 46814825 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CGAACACTAAATAATTTGGTCAGATTTGATTTACATATTTTCTGTGGACTAATTTTTAAACATTAATTAAAATGTTGTTCAAGTACACTGTTACAATTCATATAGGGAAATCAGTCAAAGTCAATACATTAATTGGGCCCTCTATgagtttcacatgactgggaatacagatatgcatctgttggtcacagataccttcataaaaaagtaggggtgtggatcagaaaaccag

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU57116 lncRNA downstream 219 46813954 ~ 46814375 (-) True G51122
TU57070 lncRNA downstream 1017 46781766 ~ 46813577 (-) True G51078
TU57005 lncRNA downstream 9541 46798561 ~ 46805053 (-) True G51038
TU57085 lncRNA downstream 50521 46763862 ~ 46764073 (-) True G51091
TU56890 lncRNA downstream 200173 46520583 ~ 46614421 (-) True G50926
TU57157 lncRNA upstream 39002 46853827 ~ 46857698 (-) True G51149
TU57170 lncRNA upstream 85339 46900164 ~ 46911959 (-) True G51160
TU57171 lncRNA upstream 86837 46901662 ~ 46902038 (-) True LOC118964698
TU57175 lncRNA upstream 109203 46924028 ~ 46967388 (-) True G51165
TU57186 lncRNA upstream 153620 46968445 ~ 46969145 (-) True G51175
XM_021603297.2 mRNA downstream 71561 46737435 ~ 46743033 (-) True LOC110524015
XM_021603103.2 mRNA downstream 717487 46085582 ~ 46097107 (-) True tcp11l1
XM_021603095.2 mRNA downstream 717488 46085582 ~ 46097106 (-) False tcp11l1
XM_036978555.1 mRNA downstream 717589 46085582 ~ 46097005 (-) False tcp11l1
XM_021603074.2 mRNA downstream 737853 46025778 ~ 46076741 (-) True LOC110523921
XM_021603330.2 mRNA upstream 2231 46817056 ~ 46838556 (-) False LOC110524028
XM_021603323.2 mRNA upstream 2231 46817056 ~ 46838557 (-) False LOC110524028
XM_036978804.1 mRNA upstream 2231 46817056 ~ 46839552 (-) False LOC110524028
XM_036978815.1 mRNA upstream 2231 46817056 ~ 46839553 (-) True LOC110524028
XR_005051918.1 mRNA upstream 86496 46901321 ~ 46902393 (-) False LOC118964698
TU55801 other downstream 864643 45948958 ~ 45949951 (-) True G49962
TU55610 other downstream 1093470 45720805 ~ 45721124 (-) True G49774
TU52237 other downstream 3685565 43038728 ~ 43129029 (-) True tspan9a
TU47067 other downstream 7792569 39021805 ~ 39022025 (-) True G41868
TU45924 other downstream 8622858 38187488 ~ 38191736 (-) True G40768
TU57229 other upstream 249949 47064774 ~ 47119033 (-) False G51214
TU57327 other upstream 474114 47288939 ~ 47289681 (-) True G51285
TU57725 other upstream 562816 47377641 ~ 47378543 (-) True G51649
TU57798 other upstream 727551 47542376 ~ 47561209 (-) True LOC110524104
TU59011 other upstream 1479283 48294108 ~ 48304136 (-) True LOC110524264

Expression Profile