RNA id: TU56635


Basic Information

Item Value
RNA id TU56635
length 4085
lncRNA type read_through
GC content 0.45
exon number 2
gene id G50695
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 47019866 ~ 47124997 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

catatatatcatatcatcatttCGTTTTCagtttgtgtagtgttcagttttgattaaaaatatgacgaacacttaccacgctgcgtattggtccgatccttcctactccttctcagaagaggaggaagaaaacTGTGACAGTCACCTACATTTCCTTAGACAATTTGGGTTTGTAGATACACAGTCAGTATCAGTGAGGTGTTCAGTGCAGCTACTTAAATGGTCTGTAGACTTGCTGACACAAAAGTAGTTTATGGCAGATTAAGATTCTAACTAGCAACCTAACCTCTCAGCAATCAGGTTCACTACCTGTACACAGACCAATCAGCCTAGTGATATTAACAGCCATCTCTTACTATAGGCACTCAGctactctcaccatctctctttctctctcataacaggcctttttttaaatgttattcacatttaccctccactagaCCCCTGGTTTCACAAGGTGGAATAAAATGTACTGATAATAAGTGATTTCAGCTTTGTACTGCTGTGAAGACGTAGGCCGTTACATCAGCATTTATCTCTTTGCAAAAAGCCTCAAGAAAACTTCTAATAAACTTGGGTAGCTGATGGATAACTGATGTTCATATCTTAAAGGACAAGTCCCTATAAGCTTTTGTCAGGAATCAGGACTAGGTTAATAAATCCAACGCAACTGCATTGTTTGTTGTTTTAGAAATGGTAGGCTATCTTATGTTAGGCCTAGTTATAAAATGACATTATAGGCCGACACTGTACACTATAGGCCTATTTTTGCCGGATTGGAGTATGTCTGCAATTGTCTTGCCTAGTGCAGCAAAACTGCCAAAACATGGCCTGGTCATGGATGAAAGCATCTGTTCAAAATGGGGTAGAACTGAGGGAACATAAGGCGGACCCCAGGATTTCAGCTTCCTGTGTTAGCTGTTGTTCTGCTAGTGAGCGTATACTGAGAGCACACAGCTGATTAACCCCTTCACTGCCGGCCAGAGAAATTGAAATGTATGCAAATGTTTCCCAGTTTATGCAAATACTTGAACCATGACGTGAAACCGTGAAAGAAAGAAGGCCATGTTTCAGTTATGGTGACGCACGATCACATGTAGCCTAACTAACCTAACCTTCTTTCTTGAACCAGTTCTAGAACAATTGATACAGCCATACTGCTCTGCTAAGTCATAGCTTCTCATCATGTTTCTAGAGAGAAACTGGGTACGATGCATGACTGATCTTACACTGCAATATGAGTCTTTGCACTGCCCCCCATATACATCTCTACAAAAATGTGGTGACACCTCTTAAACTTGATGGATATCTTTATAATGCAAGTAAGCTTTGGGCTTTGGTGGAGAGAATGCGTTTCGGAATTAACCTTAGACAACAATACATAAGTTGCCAAAAAGTATTTATTATGATGGACTGTGAAAAACCCAATGTACTGTGTGAGAGCAGATATGACATTTTCTGTCATTTAAATAGTTGAGGCTGTGTGTAAGTTTAGATGGTGTTCAAGGTGCAAATTGTTCAACCTCCTTTCGTTACAGACCTTTAGTGCCCCCTTgtggaatatcacctgtcgtTACATGGGGATCAACATTTGTTTGTGATGGTTGCAAAAACAACATGGGTAATGTTAGAATAAAATCATGCTGAGGAAGCTTTATTCAAATGATGTAGGATGAGACACAAAGTGTCGTACAGTGTCAGGCTTCAGATCAAAAGAAAAACGATACAGTCACTGCCTCGCAGTCCAACCAACGGTATTTTAAACTAAGCACAGTTTGAAAGCTGTGAAATGTCAGTCACATTTCACAAATGTAAGGCAACACTACATATATTCCAGATAAAGGGGTCATTTTTATTTGTATAAATGGAAGATTTATATAAGCATTGTGTTATGTGGCACTATCCAGGTCTTTCTTGCATAAGTGGGTTATTTTGGCAAGAGAGACCTGGTTACTGTGTAACCCAGCAGTTATATTAAATCTGCAGCTGTCTGCTTCCCTTACATGTGCAAGTTGAGACAGGGCCTCTTGACTCAAGCGAAGAAACCTTTGGCCAAATATTACGACAAACAAGCCTATTGGTCAGAAAATGTTGTTCAGCATTCTCGCATTTCATAAACACTGTGTTTGGATATATCCTCATTTCAAATGCTGTAGTACAAATAGTTCCACCTTAGAATTTGTCAGTGTTGCTATACATTGAAAACGTGAAGAATTATGACATTAAATTGTGAGTCAGATGTGCCACCTTCGGATTAATAAAAATTTGAATCGGAAATTAATTTATATTAGTCTGCTCAGCACTTACCTCTTCTCCTTGGTCAACAAATCAACAAGTCCAATGAAGAAAAAAACATTCTACTAAAAGGGAATACTTCATAGCTCACAAGAAACGAACAACACCCCACAGATAATTTTCAACTGCAATAAAACTTTATAGAAACAGAATTCTTTGGAACATGGtgatgataaattaacatttgCCTAACTAGAATAACAAGTGGATTAATATTAATCTCTAGTTGATACTGAGGGACATATTATATCATCACACCAGCGTACTAGATACTCTGGATACTCCTAAGGGGTTGAAGCAGTCCATCTTCAGGAAGAGAACACTGTTCGAGAAGCTCCACACCCCAGGGATGAAAGTACTTTGACATCTTGTGGCTCCTGTTGGGTCTCATAGGAAAAGTCTGTTCCAACAGTACTTCCGACagtagctgctgctgctcatgCACAACAGCCTGGATCGGTGGGCGCTGGTTCATTTCTGTCACCTGCCCTTTGTGGTTCGGGGTTGATAGGGCAATGGAGGTACTAGGATGGCAGGCAGGGCAGACGCTGGGATGATGCTGGCTGATCCTCTCTGGCCATGGGAGGCAATGAGGTCTCAATAGGGCTCCTGATTGGCGCAGCGGTATAAGGCACTGGTCCCATAGggtggctcacaattggcccagtgtcgtccgggttagggtttggccggggtaggtcgtcattgtaaataagaatttattcttaactaaCTACacaatttaaataaaggttaaaaaaaataaagatatgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgcgaccccTTACAACTGGCTTTGCTCCATCTCTTCAGAAAGAGACTCTTCATCCACCTCCAAGATCGAGGACAgtgatggagagacacacactgggaAGAAAGGCCCAGACTTAAAGTTAACGTCCCAGTGAATGGGCTTCACTCTCTTCCTGCGCCCTCGTTGGCTATTCTCCCATTCACGCTTGGCCTTGGCACGGGAGGCGGGCATGTGCCCCCGCTTGATAGGAGGCTGTTCTGCCAGTGGGACCAAGGGGGTCAAGGGGATTTCAAAGGGGCACTTCTCACCCGCCTGCACAGCTCTCCTACTGGTCAATAAGGGGGAGTGTTCGGTGTGACCTGTGTGGCTGGGCGTAGGTCTGGGCAGGGGGTGACAGCCATCATCTCCGCCTACGTTAGCTGGGTGGCAGACTAAAGGTGGACCACAGAGGAACAACCTCTCAGTGCTACTGAATGACAGGGGCTCAGAGGGTAATATGATTTGTTTGTCACCCACTTGTTCTGGTAGCTGCTGGTCCAGCATAGCAGACCGGATCTGTAAGAGCTGGATCCTCTTCGACACACTCCGTGATCTGGTGTTGGCAGGCCGGGCTGGCACTGGGGAGGCAGGTGGGGCAGGCACTCGGCTGGAAGGAACCGGAGAAGCAGATGGAGTAGGCACCAGAAGGTTAGGTACATAGCTGACCATTGGGGTAGGCAATGGGATGGCCATCTGGGCAGGTGAGGCTGACACTGCAATTGTTGGCAGCACAGGGAAAGAATTGGTGCTCTCCATCCTACCCATGGAGTTTATAAGCTCTAAAGTCTGGTTAGGGAACCTCAGAGTGCTGCCATCAGTATTTCTTGTTATCCTAGCTATCCCGGTCTTGGGTCGAGCCAGGCTTCTGCTTGCCTGTTTCTCCGGCTGGAGGACATCCACAGGAGAACATGGCGGTTGCAAGAGGCTGCCGTCGGACAGAGACCGTCTGGCCTGACCAGGAGGAGAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU56677 lncRNA upstream 37492 46977374 ~ 46982374 (+) True G50728
TU56649 lncRNA upstream 98059 46874200 ~ 46921807 (+) True G50702
TU56647 lncRNA upstream 133075 46873088 ~ 46886791 (+) True G50701
TU56602 lncRNA upstream 181434 46837786 ~ 46838432 (+) True G50672
TU56590 lncRNA upstream 210427 46807346 ~ 46809439 (+) True G50661
TU56722 lncRNA downstream 35237 47160234 ~ 47221869 (+) True G50765
TU56715 lncRNA downstream 89723 47214720 ~ 47239007 (+) True G50759
TU56622 lncRNA downstream 121871 47246868 ~ 47247246 (+) True G50682
TU57350 lncRNA downstream 274291 47399288 ~ 47400801 (+) False LOC110524097
TU57351 lncRNA downstream 274291 47399288 ~ 47400801 (+) True LOC110524097
XR_005051900.1 mRNA upstream 158401 46854230 ~ 46861465 (+) False LOC110524042
XR_002473536.2 mRNA downstream 118860 47243857 ~ 47246448 (+) False LOC110524064
XR_002473535.2 mRNA downstream 119742 47244739 ~ 47246448 (+) True LOC110524064
XR_002473034.2 mRNA downstream 131596 47256593 ~ 47260224 (+) False LOC110520864
XM_021603401.2 mRNA downstream 191301 47316298 ~ 47339999 (+) False lamb4
XM_021603410.2 mRNA downstream 191318 47316315 ~ 47339999 (+) True lamb4
TU56623 other upstream 158402 46857908 ~ 46861464 (+) True LOC110524042
TU55851 other upstream 1026975 45992273 ~ 45992891 (+) False G50010
TU55850 other upstream 1026975 45992505 ~ 45992891 (+) True G50010
TU55125 other upstream 1283086 45735053 ~ 45736780 (+) True G49335
TU54914 other upstream 1601686 45414706 ~ 45418180 (+) True G49142
TU56739 other downstream 102249 47227246 ~ 47258898 (+) True LOC110520864
TU58177 other downstream 881677 48006674 ~ 48024958 (+) True G52080
TU58443 other downstream 1255545 48380542 ~ 48383257 (+) True G52324
TU59387 other downstream 1768500 48893497 ~ 48893912 (+) True G53181
TU60888 other downstream 2912577 50037574 ~ 50083996 (+) True LOC118964841

Expression Profile