RNA id: TU57229


Basic Information

Item Value
RNA id TU57229
length 2550
RNA type TUCP
GC content 0.41
exon number 4
gene id G51214
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 47064774 ~ 47236625 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGTTTTTTTTAGCACCCTTTCTTACCCAAAGAGAAATAAGTTGCTAGTTACTTTGGCTTTGCACTCAAAAGAGTGAAACACCACAACAGGAATTATGATTGTGGAAAGTGTAAAATTAGGTAGGACTGCCAATTCACATGCCTTCCTTTAGCCATATCACTCATACTGTTTCTTGTTTAGTTCATCCATAAAAGCAGATGCGCTTTAGTTGCATCCAGGAACTTGTATAATGTGCTTATGTTATGCTTATACTTGCTTTTTTACCTTGAAAGTCGTCTTAAAAAAGGAAATTGTAATATATGTTTGTAGGACCTCTATCAGTCAATGATAACAGTTATTGGTGTCCCCCAGCTCATCCCCTTTGTTGTGTGCCGAGCAATCTTGTCATTCTTTTAAGTGTCAACCATTCTTTTAGAAACTTGTCTTCCTTTACTCAGGCACTGCAGAGTCTAAGAAGACGCATGGAAACTCTATAAGAAACATAATTCAATTTGTAGGCCagatttgaaaaggaaataataaaTCCTGAAGCTCAGATGTCAGACACCGAGGCTGCCAGTACCGTATACATAAGTTAGTGTCATTCAACACCAGCACATACTGTAAGTTCTTGTGAATCTGCTTTGTAAGTCAAAGACAGGCAAGTCTGCACTTTCATCCCAAATGATTTGTATTATAACAAAATGTAAAGTAGAGGAGCACAGATCCATAACTAAtcaaaatgtccaaatacttTGTGTTATCTCTCTAGTTATCTAAGATGCTTTTTTCTGCAATACAGTTGGATACAAGACTGATGACTCAATAACTAGTATTGACAACAGTGAAGATGTTATGTCCCAGGGCCATCAGGTTCATCAGAGGAAGGCAATTTCTCTGAAAAAAATCTGACCGGTATGCCTATACCTTACATACACATGGACCTATTCTTATCTGATATGTCAGTGCATTTTCACTCTGtagtcaaataaaatgttattggtcacatgcacatggttagcagatgtttatacgagtgtagcgaaatgcttgtgtttctatttCTGATTTTGCAGTAATATcttacaagtaatctaacaatttcacaacaactaccttatctcttcaactgatcgctgctcACACCTGCCCGCcagcccagcatcactactctggatggttctgacttagcatatgtggacaactacaaatacctagctgtctggttagactgtaaactctccttccagactcacattaagcatctccaatccaaaatgaaatctagaatcagcttcctatttcgcagcaaagcatccatcactcatgctgccaaacgtactcatgctgccaaatgatccttgacttcggcgatgtcatttacaaaatagcctccaacactctactcagcaaattggatgcagtctatcacagtgccatctgttttgtcaccaaagccccatatactacccaccattgcgacctgtatgctctcgaaggctggccctcgcttcatattcgtcgccaaacccactggctccaggtcatctataagtctttgctagataaagccccgccttatctcagctcactggtcaccatagcagcacccacccgtagcacgcactccagcaggtatatttcactggtcacccccttagcaaattcctccttcggccacctttccttccagttctctgctgccaatgactggaacgaactgcaaaaatcactgaagctggggactcatatctccctcactagctttaagcaccagctgtccgagcagctcatagatcactgcacctgtacatagccctccTGTAatcagcccatccaactacctcatccccatactgttatctattttatttattttgctcctttgcaccccagtatctctacttgtacactcatcttctgcacatctatcactccagtgtttaattgctatattgtaattatttcgccactatggcctatttattgccgtacctccgttatcctacctcatttgcacacattatATAGacgttttctattgtattattgactgcatgtttgtttattccatgtgtaactctgtgttgttgtttgtgttgcactgctttgctttatcttggccaggtcgcagttgtaattgagaacATTTTCACTCTGTAGTGTCAACTTATGGCCGTACTGTGCTGGTCCAGATCAATCCTGTCTTTATCAGTTAGTGTATTTCCAACCATGCCAGCACAGAACGGTTCGGTTTGGATTGGACACAagtcaAGACGTTAGATCTGGAACTAGTGTGTCAGGATAGATGATAACACAGAAGGATTACCACGCTTTACATTGTTTCTCTTGAGGGAGGGAACTTGATTTAATAGGGATTGCTTTTATTAGAAGGTTTACATTGCAAACAGATTGTTGGGCTTAGATTCCATACAGATTGAGTCTGCCTTGATGTCAGCATTGCACATTCTCCTCTCACATCCTTATCTATGTAGTTATTTAGTTGGGATTATTAGTTTAATTTCAACACAGTCTCTGCAGATACAGCTGTAACCTTGTAGAGTTAATAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU57197 lncRNA downstream 19422 46990948 ~ 47045352 (-) True G51184
TU57194 lncRNA downstream 82401 46977457 ~ 46982373 (-) True G51181
TU57186 lncRNA downstream 95629 46968445 ~ 46969145 (-) True G51175
TU57175 lncRNA downstream 97386 46924028 ~ 46967388 (-) True G51165
TU57170 lncRNA downstream 152815 46900164 ~ 46911959 (-) True G51160
TU57266 lncRNA upstream 10206 47129239 ~ 47163592 (-) True G51236
TU57248 lncRNA upstream 23491 47142524 ~ 47242553 (-) False LOC110524061
TU57249 lncRNA upstream 23491 47142524 ~ 47242553 (-) False LOC110524061
TU57277 lncRNA upstream 70763 47189796 ~ 47219519 (-) True G51246
TU57237 lncRNA upstream 88350 47207383 ~ 47236625 (-) True G51214
XR_005051908.1 mRNA downstream 26194 47037419 ~ 47038580 (-) True LOC118964693
XR_005051909.1 mRNA downstream 90085 46972769 ~ 46974689 (-) True LOC118964694
XR_005051913.1 mRNA downstream 117248 46946048 ~ 46947526 (-) True LOC118964697
XR_005051918.1 mRNA downstream 162381 46901321 ~ 46902393 (-) False LOC118964698
XM_036978815.1 mRNA downstream 225221 46817056 ~ 46839553 (-) True LOC110524028
XR_005051921.1 mRNA upstream 25389 47144422 ~ 47145496 (-) True LOC118964699
XR_005051910.1 mRNA upstream 52381 47171414 ~ 47172690 (-) True LOC118964695
XR_005051912.1 mRNA upstream 87470 47206503 ~ 47207921 (-) True LOC118964696
XR_005051924.1 mRNA upstream 111870 47230903 ~ 47231586 (-) True LOC118964701
XR_005051899.1 mRNA upstream 120099 47239132 ~ 47243206 (-) False LOC110524061
TU55801 other downstream 1114823 45948958 ~ 45949951 (-) True G49962
TU55610 other downstream 1343650 45720805 ~ 45721124 (-) True G49774
TU52237 other downstream 3935745 43038728 ~ 43129029 (-) True tspan9a
TU47067 other downstream 8042749 39021805 ~ 39022025 (-) True G41868
TU45924 other downstream 8873038 38187488 ~ 38191736 (-) True G40768
TU57327 other upstream 169906 47288939 ~ 47289681 (-) True G51285
TU57725 other upstream 258608 47377641 ~ 47378543 (-) True G51649
TU57798 other upstream 423343 47542376 ~ 47561209 (-) True LOC110524104
TU59011 other upstream 1175075 48294108 ~ 48304136 (-) True LOC110524264
TU59630 other upstream 1865152 48984185 ~ 48985917 (-) True LOC110532382

Expression Profile