RNA id: TU57732


Basic Information

Item Value
RNA id TU57732
length 373
lncRNA type antisense_over
GC content 0.45
exon number 2
gene id G51652
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 47383658 ~ 47384488 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aaaacatattttcatatttttctcGTTCTTTTCAGTTTCAGAACAAGCCATACAATCCCAGGTGAGCCTGGGAGTGACAGTGCCCATGAGCCAGTATGTTACGATCGAACAACCTTCCCAAATGACTATGACTGTAGTTTTCTATGGACATTCTTGACAACTCCGGACAGCTTTTCCTGCTCCTTCTTGCACCTCGTTTCTGTCGGAATAAGAACACAGACCGGCTCCAGTTCGGTTTCTGTATCTCCTGTCTCAGCATTGTTCACCGGGTCCATAGTCCTGCGCCGCTTCTCCTTCCTCACTAGAGcaaggtttttatttttacagacTAGCTACAATTCTTCACATTCTAGGTTAACTACCGGTGCCAGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU57250 lncRNA downstream 97314 47239133 ~ 47286344 (-) True LOC110524061
TU57317 lncRNA downstream 107310 47275397 ~ 47276348 (-) True G51277
TU57295 lncRNA downstream 128903 47253034 ~ 47254755 (-) True G51261
TU57249 lncRNA downstream 141105 47142524 ~ 47242553 (-) False LOC110524061
TU57893 lncRNA upstream 304632 47689120 ~ 47690770 (-) True G51802
TU57993 lncRNA upstream 422066 47806554 ~ 47806900 (-) True G51899
TU58008 lncRNA upstream 442480 47826968 ~ 47830052 (-) True G51914
TU58071 lncRNA upstream 506990 47891478 ~ 47891884 (-) True G51977
TU58087 lncRNA upstream 516741 47901229 ~ 47901581 (-) True G51993
XR_005051899.1 mRNA downstream 140452 47239132 ~ 47243206 (-) False LOC110524061
XR_005051924.1 mRNA downstream 152072 47230903 ~ 47231586 (-) True LOC118964701
XR_005051912.1 mRNA downstream 175737 47206503 ~ 47207921 (-) True LOC118964696
XR_005051910.1 mRNA downstream 210968 47171414 ~ 47172690 (-) True LOC118964695
XR_005051921.1 mRNA downstream 238162 47144422 ~ 47145496 (-) True LOC118964699
XM_036978986.1 mRNA upstream 156736 47541224 ~ 47549582 (-) False LOC110524104
XM_036978980.1 mRNA upstream 156736 47541224 ~ 47561223 (-) False LOC110524104
XR_005051934.1 mRNA upstream 212216 47596704 ~ 47604280 (-) True LOC118964710
XM_036979041.1 mRNA upstream 249392 47633880 ~ 47676258 (-) False LOC110524125
XM_036979038.1 mRNA upstream 249392 47633880 ~ 47682981 (-) False LOC110524125
TU57725 other downstream 5115 47377641 ~ 47378543 (-) True G51649
TU57327 other downstream 93977 47288939 ~ 47289681 (-) True G51285
TU57229 other downstream 264625 47064774 ~ 47119033 (-) False G51214
TU55801 other downstream 1433707 45948958 ~ 45949951 (-) True G49962
TU55610 other downstream 1662534 45720805 ~ 45721124 (-) True G49774
TU57798 other upstream 157888 47542376 ~ 47561209 (-) True LOC110524104
TU59011 other upstream 909620 48294108 ~ 48304136 (-) True LOC110524264
TU59630 other upstream 1599697 48984185 ~ 48985917 (-) True LOC110532382
TU61709 other upstream 3027146 50411634 ~ 50412128 (-) True G55408
TU61943 other upstream 3380875 50765363 ~ 50767431 (-) True G55627

Expression Profile