RNA id: TU57893


Basic Information

Item Value
RNA id TU57893
length 1617
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G51802
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 47689120 ~ 47690770 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atgaacgtagcaccttcaggagtttggaaattgctcccaaggatgaaccagacttgtcgaggtctacaatactttttctgaggtcttggctgatttctttagattttcccatgatgtcaagcaaagaagcactgagtttgaaggtaggccttgaaatacatccacaggtacacctacgattgactcaaatgatgtgaagtagcctatcagaagcttctaaagccatgacataattttctggaattttcaaagtgaagtacTCGGgcggtaaacaattgttggaaacattacttgtgtcatgcacaaagtagatgtcctaaccgacttggaaGACATTTTTTtatgagttttattgactccaacctaagtgtatgtaaacttcagacttcaactttAGATAGATACCACAAATTACTCAAGGAAAATATGTTATGCCAATAACCAGATAAAATGATTTAGGATTAagacacactacatgaccaaaggtatgtggacacctgcttgtcgaatatctcattccaaaatcatgggcattaatatggagttggtcccccctttgttactacaacagcctccactcttctgggagggCTTTagactagatgttggaactttgctgcagggacttgcttccattcatccacaaAAGCGTTAGTgaagtcaggcactgatgttgggcgattaagcctggctcgcagtcggcgttccaattcatccaaaaggtgttcaatggggttgagttcagggctctgtgcaagccagtcaatttcttccacaccgatatcaacaaaccctttctgtattagcctcgctttgtgcacggggcattgtcatgctgaaacaggaaagggccttcctcaaactgttggcAAGAAGTGGTAAggacagaattgtctagaatgtcattgtatgctgtagcattaagatttgcCTTCACTGGAATTTAGGGGGGACTCACCCGAACCATGAAACTACCCCAGAtcgttattcctcctccaccaaacattacagttggcactatgcattgagtcaggtagcgttctcctggtataCGCAAAACCCAGAGTCATTCGTTGGACTGCCGGATGGTCAAGCGTGATCCATCACTCCAGATAACGCGTTTCCACTGAGAGTCCAATGgctgtgagctttacaccactccagccgatgtttggtattgcgcatggtgatcttaggcttgtgtgcagctactctgccatggaaaccaatttcatgaagctcccgacaaacagttattgtgctgacattgcttccagaggcagtttggaactcggtagtgagtgttgcaactgagaacATACAATTTTTACGCGCTATGCGCTACAGCACCTGGCGGTtgcctagacgtttccacttcacaataacagtacttatagttgaccggggcagctctagcagggcagaaatatgatgaactgactagttggaaaggtggcatcctatgacggtgccatgttgaaagtcactgagctcttcagtaagaccattctactgccagtgtttgtctatggagattgtatggctgtgtgctcgattttatacacctgtcagcaacaggtgtagcCTACGTAGccgaatctactaatttgaaggggt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU57732 lncRNA downstream 304632 47383658 ~ 47384488 (-) True G51652
TU57250 lncRNA downstream 402776 47239133 ~ 47286344 (-) True LOC110524061
TU57317 lncRNA downstream 412772 47275397 ~ 47276348 (-) True G51277
TU57295 lncRNA downstream 434365 47253034 ~ 47254755 (-) True G51261
TU57249 lncRNA downstream 446567 47142524 ~ 47242553 (-) False LOC110524061
TU57993 lncRNA upstream 115784 47806554 ~ 47806900 (-) True G51899
TU58008 lncRNA upstream 136198 47826968 ~ 47830052 (-) True G51914
TU58071 lncRNA upstream 200708 47891478 ~ 47891884 (-) True G51977
TU58087 lncRNA upstream 210459 47901229 ~ 47901581 (-) True G51993
TU58111 lncRNA upstream 224178 47914948 ~ 47915246 (-) True G52017
XM_021603483.2 mRNA downstream 54 47633880 ~ 47689066 (-) False LOC110524125
XM_021603497.2 mRNA downstream 54 47633880 ~ 47689066 (-) False LOC110524125
XM_036979030.1 mRNA downstream 54 47633880 ~ 47689066 (-) True LOC110524125
XM_036979038.1 mRNA downstream 6139 47633880 ~ 47682981 (-) False LOC110524125
XM_036979041.1 mRNA downstream 12862 47633880 ~ 47676258 (-) False LOC110524125
XM_021603540.2 mRNA upstream 4412 47695182 ~ 47716505 (-) False LOC110524148
XM_021603531.2 mRNA upstream 4412 47695182 ~ 47722400 (-) True LOC110524148
LOC110532355 mRNA upstream 34843 47725613 ~ 47733539 (-) True LOC110532355
XM_021603570.2 mRNA upstream 94868 47785638 ~ 47788293 (-) True LOC110524174
XM_021603649.2 mRNA upstream 352722 48043492 ~ 48049196 (-) True LOC110524205
TU57798 other downstream 127911 47542376 ~ 47561209 (-) True LOC110524104
TU57725 other downstream 310577 47377641 ~ 47378543 (-) True G51649
TU57327 other downstream 399439 47288939 ~ 47289681 (-) True G51285
TU57229 other downstream 570087 47064774 ~ 47119033 (-) False G51214
TU55801 other downstream 1739169 45948958 ~ 45949951 (-) True G49962
TU59011 other upstream 603338 48294108 ~ 48304136 (-) True LOC110524264
TU59630 other upstream 1293415 48984185 ~ 48985917 (-) True LOC110532382
TU61709 other upstream 2720864 50411634 ~ 50412128 (-) True G55408
TU61943 other upstream 3074593 50765363 ~ 50767431 (-) True G55627
TU61953 other upstream 3086977 50777747 ~ 50783844 (-) False LOC110524514

Expression Profile