RNA id: TU57993



Basic Information


Item Value
RNA id TU57993
length 320
lncRNA type antisense_over
GC content 0.56
exon number 2
gene id G51899
representative True

Chromosome Information


Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 47806554 ~ 47806900 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CtccctgtaatgtgtgtgtatgggagaaaTCACTTACCCTGGCCAGGGACACAGTGTCACTCTTCAGGGACAGCAGATCACAGCAGGCCAGTAGGTCCCCCCCTTCGATGAGGCTGGGACTGAGGTCTGCACTGAGAGGGCTGGGGCTGAGGTCTAAAGTGGTCACTGGAATCATGGTTGCGATTGCTAGTTCTTGTGGTCTCTCTGGTCCTGTTGGTATCTCTGGCCTCTCTGCTGGTGTCTGTGGCCACAGTGGTCCAGCCTCcactctctctgttacctctgGCGCTGTCTCTCCACCTTGATTCACCACTTGCCCC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU57893 lncRNA downstream 115784 47689120 ~ 47690770 (-) True G51802
TU57732 lncRNA downstream 422066 47383658 ~ 47384488 (-) True G51652
TU57250 lncRNA downstream 520210 47239133 ~ 47286344 (-) True LOC110524061
TU57317 lncRNA downstream 530206 47275397 ~ 47276348 (-) True G51277
TU57295 lncRNA downstream 551799 47253034 ~ 47254755 (-) True G51261
TU58008 lncRNA upstream 20068 47826968 ~ 47830052 (-) True G51914
TU58071 lncRNA upstream 84578 47891478 ~ 47891884 (-) True G51977
TU58087 lncRNA upstream 94329 47901229 ~ 47901581 (-) True G51993
TU58111 lncRNA upstream 108048 47914948 ~ 47915246 (-) True G52017
TU58127 lncRNA upstream 118434 47925334 ~ 47925952 (-) True G52033
XM_021603570.2 mRNA downstream 18261 47785638 ~ 47788293 (-) True LOC110524174
LOC110532355 mRNA downstream 73015 47725613 ~ 47733539 (-) True LOC110532355
XM_021603531.2 mRNA downstream 84154 47695182 ~ 47722400 (-) True LOC110524148
XM_021603540.2 mRNA downstream 90049 47695182 ~ 47716505 (-) False LOC110524148
XM_021603483.2 mRNA downstream 117488 47633880 ~ 47689066 (-) False LOC110524125
XM_021603649.2 mRNA upstream 236592 48043492 ~ 48049196 (-) True LOC110524205
XM_021603662.2 mRNA upstream 264929 48071829 ~ 48123356 (-) True LOC110524212
XM_021603717.2 mRNA upstream 412540 48219440 ~ 48247045 (-) False LOC110524242
XM_021603707.2 mRNA upstream 412540 48219440 ~ 48247048 (-) False LOC110524242
XM_021603724.2 mRNA upstream 412540 48219440 ~ 48247048 (-) True LOC110524242
TU57798 other downstream 245345 47542376 ~ 47561209 (-) True LOC110524104
TU57725 other downstream 428011 47377641 ~ 47378543 (-) True G51649
TU57327 other downstream 516873 47288939 ~ 47289681 (-) True G51285
TU57229 other downstream 687521 47064774 ~ 47119033 (-) False G51214
TU55801 other downstream 1856603 45948958 ~ 45949951 (-) True G49962
TU59011 other upstream 487208 48294108 ~ 48304136 (-) True LOC110524264
TU59630 other upstream 1177285 48984185 ~ 48985917 (-) True LOC110532382
TU61709 other upstream 2604734 50411634 ~ 50412128 (-) True G55408
TU61943 other upstream 2958463 50765363 ~ 50767431 (-) True G55627
TU61953 other upstream 2970847 50777747 ~ 50783844 (-) False LOC110524514

Expression Profile