RNA id: TCONS_00027355


Basic Information

Item Value
RNA id TCONS_00027355
length 5077
lncRNA type antisense_over
GC content 0.31
exon number 1
gene id XLOC_013485
representative True

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 29397940 ~ 29403016 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCTCTTGCTGCTGACCGTCCTCCAGAGCGGGTGAAGAGGAGCTGTCAAAGCGGGCTGGGTCGGGAGAGAGTGAGCCAGCTTGATGATGTTTAAAATGCTTTACTCTAagcaggaaaataaaaaaaatacaaaaaaacagacAAGAGGCTGCACGGGAGTTTTCAGTGCGCTCCTAAACTCCAGATTATCCGTGGCACAGTCTATTGCACAGATGCATCGGATCTCTTTCTCCTCTTTTTACATGTGGATTTCGGCGGCCTTGTATTTCAAACATTTAACACTTTGGTGACTCCTCGAGTGCAGACATCATCGTGGTCAAACGGGTAAGTGTAACGTGAGAGATGTGCGCTAGATGCTGCTGACACAGATCGAGCTCAGAGTGTTTTTAAACTCGACACACTACagtacagtttaaaagcaatgcTGAGTTTTATAGCTGACGTGACGTCAGGTTCGGAACGAGCCAATGGGGTAGCTGGATCTCAGCTCGTTAACATATGGGTTCGGAAACCAAAACTTTTTCTCGTCAGCTGACTGTCATTTTGGATATGCAGGAGCAAAGAGTCGAATAGGTTTCGAACATTTAACTCTTTAGCTGGCTACTACCTTTTGCAAAAAGTGTATAACTTGCTTTAGTAACACGAGACAATAagcttaaatttaaataatattattaagtagatcactttattttctttttgacagTTTGCTTTTCTACTACTATTATATTCTGTAAAACccattaatgtttaaattatttgaaacaatGTTGCACATACGTAGTCACACGTAGAATAATTCTTTTTAACATAATGGTTGTTatataattatgaaaataattatGTGGGCTACtgtatgaaatgtttttttataagcatTATCAAATAAAAACTTATATTTTATAGAGCGTTatgattgtcattttaaatctcattaataaaaatatgttaataattatcaaaattattaatCTCTTTAGTTAGATAAAGTACGCACCTCATAAAACTCAACAGTGCCACCTTTTGGATCTAAATAGAATTGAGTAGCGAGCACGCACGTGTGTGTGTAACCAGATTTCTGTCAGGGTTAAGGTgaggggtaacactttacaataaggttcattagttaatgcatttactaacatgaactaatcatgaacaacacatgtacagcatttattaatcataattgaacatttactaatgcattattaacatccaagtccatgcttgttaacattagttaatgcagcataagttaacatgaactaacagtgaattactgtattttcattaactaacgttaactaacatgaacaaatacagtagtaaacgtattgttcattgtttgttcatcttcgtaaatgcattaattaacattaactaatgaaccttattgtaaagtgaccAGGTGAGGACCTAATATATAGAATTAATATTATGACTGTGTGATTTTCCCCGTTTCTATTTATATGATAAAGTGGGATAATGATAATATAGTTTTAGACAGTGTAAGTTTGTGTTTTCACTAACGTGaacaaaaatgaacaatacataaattacatatttattatattatattcatacttattaaaatctaaattcatgcatgtcaacattagttaatgcagggTGAGTTAGCATGAACTAATAGTGAACAACTTTATGGTAACTAGCATTAACAACACATTcttaaatgttgaactatgattaataaatgttgtatgcattttttattattattacctcatgttagtaaatacattaactaacactaattaatgaaaccttatttaaAAGCGTAATAGTCTATTTTTGTGACAAAATAAATTCATGTAcaataaaacatgaaatgaacgaacgaatgaatgaatgaatgaatgaattaattaattaattaatggatgaatgaattaactttgactgaatTATTCATGCTAAATGTCaggttgtgtaaaaaaaaaaaaaaaaaaaagtatttcactAAAAGTAACAGCAACatgcttttttaaatcaaaactgcACTCTTTTCACTCTAAGACCCGATCTACATTAAGCTGTAGTTCAGTGATCAACCAAATGATTCAAGCATAGATGAAGAGAACAGCTATAAAACTTGTTTATCAGTTCTCTGAGATCTGCCTCATCTAGTCATACATTAAACTACAATTCTGCTCGTTGCTCTTTAGTGGAGGTCAGGGGTCGATTACTGCAGTATTTCTTACAGATTTTTCTCTCTCCCTTTCATTCATTGAGTTTCAAGGAACATGGCATTTGAATAAagtaccttttttttctttgcataataCCTGTCTGATTAATTAATGATCCTGTCTCGATCTTCAATTTCATGATTCTTAAGTTCCCGTTTTTCCtgaatttcaattaaaaatcagTAGAAGGGTAATGGAAAGAAATTAAAGTCCATGAGAGTGTGTTCATGCAATGATGAGTTACCCATTTAGGAAAAAAAAGTCTTGTGTTAGGCTTGACACTGCCCCAAACATTTCATACCCCACACAAGAGCCTATAATCATTTACTCAGTATCTTTTCTGGCAAAGTCTATAATCTCATGCTTGGGATCCTCTGTATTTTTAGAGTCTGGACTGAGACCAGTGTAATGGTCTCTCTGACTGCTGGACTCGAATGATTACATCAATAGCTgttactgtacagtatgtgtgctGTATTTTCATGAACTTAACACTACATTTGCAAATTAAATCCTCtgacgaaaaaaaaaatcaccttagTGTATAAAATGTGAACTTAGAATGGTTTTGCAgctattattttctttaaaatgaattaaataaaacactattACTGTATAAACGATAAAAAATCCCAAGTAATACATAAATTGTGAGTACTTATTAAAAggattattgtaatatttaactGAAATTGTTCCTCATTTCCACCCAGAACTATacatattttgcttgaattagtTTCATAACTTTAACATTTTGTTTCCacagaattattaaattatttgcctGTCCacagttaaaaacaaatattttgcacATCACTGCACAATTACACCTAGTAGgaataaatgtaatgttcagtacAAAACTAAGTAGAGCAGGGTTTTAGTCCGATGAGGTTTTAATTCGGGTTGTATGACTCACAGTGGCCTCTCAGAACTCGAAACTGCTACAAACCTCTTATGTGAACTGAGAATATATTTCTCAGAGAATAGGTATATGCAGCTTTTTTACTCTTTTTTCTTCAGTCAGTCACTATCTCCAATCATTAATAAACAAGATTTGAATAcgtgattttaattttaaaattaagagAGATACTAAAAAGTGTATACTAAGTTGCATTctgcaattgaaaaaaaaaaaaagtcacgcTTTATTTGAAAGTGTTGTTGTTACAATGTAACTATTCAATGAACTACTGAGTAACAATGTTTATTATATGGTGAGGGTAAGAATTTGGGTTAGTTTTAGTGTTAGTTGCATATAATTATGtgtaaataattgtaattacTTTATTGAGTACATTGAACATGTGCAACACCTTAAATAATCCATTCCTTTATCTGAATTTTTTAtgcataaaacattaaaagaacAGAAAATAACATAATTGAATTATTTCATAACCTCAAAGGATTTATTTCAAATGCTGAGTTGGTTGTGCTGAATTTACATATGGATATTTCTTCTTCCACTTTTAaccacacaaacacccacactGAGGGCTTACCCCACAGCTCGACGACAGTTCCAACAAAATGCCTCAGCAAATTACTGTAATCTTGATTCTGTCAAAGCACATCGGTGAGGAGAGGATATGAGGATATGACATGACCTGAAAGTAACTTCATTTGCAGTTTAACAAAAACCCAGTTGATCAAAGTCCTGATTCTTCATTACTTTAAAACAGGACACCAATGATATTTGAGATtttgcagaaatgtttctgtacaAAATGAAGGCATATGCTGACACCTTTAATCAAAGTGTCTTATAGCTAAAAGTCATAGTTTACAATGTATTGAATGTCAAAACTGACTGGAAAtatgtattaacatattataaacaaGTCATGTTGCATTACAGATTCGTCTGAAGCTCGGTGGTATCTTTATTTGAGGAACATAGAAGATTGAAACTTTGAAAGATTGAATTTTATTTACCATGCACAAACCCAGTCATAAGTGCACATACAGTTGGAGGCAGTAATATTTAggagcttaactaggttaattaagcaagttaggataactagtcaagttattgtataaaaatggtttgttctatagaataattcaaaaaacatatatatatatattgcttaaaggggctaataattttaaccttaaattgttaaaaaaaaaaaaaactgcttttattctagccaaaataaaacaaatacattttttatccagaagaaaaaatattattgaaaaaactGAAagtttccatgctctgttaaacattatttgggaaatatttataataatttataattctgacttctactgaaTCATATGCAAATCTGGaatatctaaatattgagaaaatttcctttaaaaatgactgaattaatttcttagcaatgcatactaataataaaaataacatgtttttgatttatttactgctgggaaaaaagtaaaagaaagcaTTCATGAaacacaataaatatttattaatattaaatgttttgagatgaaaaaatatatataaatctgtgattctaactctaaaaaaaaaaaaaaaaaaaaacatataccaAAAATATATCTGTGTGCATATTAAGGTTGGTTTTGTGCTTCAGGGTCACAAATGTTGCCAGCCCCATTCAAAAAGTAAACCAGAACATGCTCATGACAATATTGATCACATTATACACAGCcaaatatatacacactataTGCAAATATACACAACCTGATGTAATACTTCTCTAGAATATATTATGTTAATGTTACAGCAGCTGACTGTGATtgatttacattttgcatttctCATGCAGATAAATCTGTTGGTTTTGTAAGACTTGGAATATTTGTTCTGTCATTATTGAATAAACCTATGATTGCAGTTGT

Function

GO:

id name namespace
GO:0070482 response to oxygen levels biological_process
GO:0036293 response to decreased oxygen levels biological_process
GO:0009259 ribonucleotide metabolic process biological_process
GO:0009260 ribonucleotide biosynthetic process biological_process
GO:1902600 proton transmembrane transport biological_process
GO:0046034 ATP metabolic process biological_process
GO:0006091 generation of precursor metabolites and energy biological_process
GO:1901293 nucleoside phosphate biosynthetic process biological_process
GO:0042773 ATP synthesis coupled electron transport biological_process
GO:0042775 mitochondrial ATP synthesis coupled electron transport biological_process
GO:0006119 oxidative phosphorylation biological_process
GO:0022900 electron transport chain biological_process
GO:0022904 respiratory electron transport chain biological_process
GO:0098662 inorganic cation transmembrane transport biological_process
GO:0006163 purine nucleotide metabolic process biological_process
GO:0006164 purine nucleotide biosynthetic process biological_process
GO:0017144 drug metabolic process biological_process
GO:0009117 nucleotide metabolic process biological_process
GO:0009123 nucleoside monophosphate metabolic process biological_process
GO:0009124 nucleoside monophosphate biosynthetic process biological_process
GO:0009126 purine nucleoside monophosphate metabolic process biological_process
GO:0009127 purine nucleoside monophosphate biosynthetic process biological_process
GO:0046390 ribose phosphate biosynthetic process biological_process
GO:0055086 nucleobase-containing small molecule metabolic process biological_process
GO:0019637 organophosphate metabolic process biological_process
GO:0006753 nucleoside phosphate metabolic process biological_process
GO:0006754 ATP biosynthetic process biological_process
GO:0009141 nucleoside triphosphate metabolic process biological_process
GO:0009142 nucleoside triphosphate biosynthetic process biological_process
GO:0009144 purine nucleoside triphosphate metabolic process biological_process
GO:0009145 purine nucleoside triphosphate biosynthetic process biological_process
GO:0009150 purine ribonucleotide metabolic process biological_process
GO:0015672 monovalent inorganic cation transport biological_process
GO:0044281 small molecule metabolic process biological_process
GO:0009152 purine ribonucleotide biosynthetic process biological_process
GO:0090407 organophosphate biosynthetic process biological_process
GO:1901135 carbohydrate derivative metabolic process biological_process
GO:1901137 carbohydrate derivative biosynthetic process biological_process
GO:0009156 ribonucleoside monophosphate biosynthetic process biological_process
GO:0072521 purine-containing compound metabolic process biological_process
GO:0072522 purine-containing compound biosynthetic process biological_process
GO:0009161 ribonucleoside monophosphate metabolic process biological_process
GO:0009165 nucleotide biosynthetic process biological_process
GO:0009167 purine ribonucleoside monophosphate metabolic process biological_process
GO:0009168 purine ribonucleoside monophosphate biosynthetic process biological_process
GO:0048666 neuron development biological_process
GO:0015985 energy coupled proton transport, down electrochemical gradient biological_process
GO:0019693 ribose phosphate metabolic process biological_process
GO:0015986 ATP synthesis coupled proton transport biological_process
GO:0009199 ribonucleoside triphosphate metabolic process biological_process
GO:0009201 ribonucleoside triphosphate biosynthetic process biological_process
GO:0009205 purine ribonucleoside triphosphate metabolic process biological_process
GO:0009206 purine ribonucleoside triphosphate biosynthetic process biological_process
GO:0001666 response to hypoxia biological_process
GO:0045333 cellular respiration biological_process
GO:0098803 respiratory chain complex cellular_component
GO:0005743 mitochondrial inner membrane cellular_component
GO:0005746 mitochondrial respirasome cellular_component
GO:0005747 mitochondrial respiratory chain complex I cellular_component
GO:0005753 mitochondrial proton-transporting ATP synthase complex cellular_component
GO:0030964 NADH dehydrogenase complex cellular_component
GO:0044429 obsolete mitochondrial part cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0016469 proton-transporting two-sector ATPase complex cellular_component
GO:0044455 obsolete mitochondrial membrane part cellular_component
GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain cellular_component
GO:0033178 proton-transporting two-sector ATPase complex, catalytic domain cellular_component
GO:0019866 organelle inner membrane cellular_component
GO:1990204 oxidoreductase complex cellular_component
GO:0031090 organelle membrane cellular_component
GO:0045259 proton-transporting ATP synthase complex cellular_component
GO:0045261 proton-transporting ATP synthase complex, catalytic core F(1) cellular_component
GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o) cellular_component
GO:0045271 respiratory chain complex I cellular_component
GO:0031966 mitochondrial membrane cellular_component
GO:0031967 organelle envelope cellular_component
GO:0031975 envelope cellular_component
GO:0000275 mitochondrial proton-transporting ATP synthase complex, catalytic sector F(1) cellular_component
GO:0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) cellular_component
GO:0070469 respirasome cellular_component
GO:0098796 membrane protein complex cellular_component
GO:0098798 mitochondrial protein-containing complex cellular_component
GO:0005739 mitochondrion cellular_component
GO:0098800 inner mitochondrial membrane protein complex cellular_component
GO:0005740 mitochondrial envelope cellular_component
GO:0019829 ATPase-coupled cation transmembrane transporter activity molecular_function
GO:0009055 electron transfer activity molecular_function
GO:0022853 active ion transmembrane transporter activity molecular_function
GO:0044769 ATPase activity, coupled to transmembrane movement of ions, rotational mechanism molecular_function
GO:0022890 inorganic cation transmembrane transporter activity molecular_function
GO:0015002 heme-copper terminal oxidase activity molecular_function
GO:0046933 proton-transporting ATP synthase activity, rotational mechanism molecular_function
GO:0015318 inorganic molecular entity transmembrane transporter activity molecular_function
GO:0015075 ion transmembrane transporter activity molecular_function
GO:0015077 monovalent inorganic cation transmembrane transporter activity molecular_function
GO:0015078 proton transmembrane transporter activity molecular_function
GO:0042625 ATPase-coupled ion transmembrane transporter activity molecular_function
GO:0008324 cation transmembrane transporter activity molecular_function
GO:0004129 cytochrome-c oxidase activity molecular_function
GO:0016675 oxidoreductase activity, acting on a heme group of donors molecular_function
GO:0016676 oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00027354 lncRNA downstream 794825 28601593 ~ 28603115 (-) True XLOC_013479
TCONS_00026589 lncRNA downstream 1074154 28320730 ~ 28323786 (-) False XLOC_013478
TCONS_00027353 lncRNA downstream 1176192 28204344 ~ 28221748 (-) True XLOC_013477
TCONS_00027351 lncRNA downstream 1577988 27802551 ~ 27819952 (-) False XLOC_013475
TCONS_00027356 lncRNA upstream 1349468 30752484 ~ 30753423 (-) True XLOC_013493
TCONS_00027357 lncRNA upstream 1557156 30960172 ~ 30961069 (-) True XLOC_013495
TCONS_00026613 lncRNA upstream 1646473 31049489 ~ 31051597 (-) True XLOC_013496
TCONS_00026973 lncRNA upstream 2321090 31724106 ~ 31724812 (-) True XLOC_013500
TCONS_00026974 lncRNA upstream 2329607 31732623 ~ 31737816 (-) True XLOC_013501
TCONS_00026591 mRNA downstream 459028 28937061 ~ 28938912 (-) True XLOC_013481
TCONS_00026587 mRNA downstream 1500723 27843840 ~ 27897217 (-) True XLOC_013476
TCONS_00026586 mRNA downstream 1539817 27843776 ~ 27858123 (-) False XLOC_013476
TCONS_00026585 mRNA downstream 1769156 27590442 ~ 27628784 (-) True XLOC_013473
TCONS_00026583 mRNA downstream 2081341 27309404 ~ 27316599 (-) True XLOC_013470
TCONS_00026595 mRNA upstream 482174 29885190 ~ 29896367 (-) False XLOC_013486
TCONS_00026596 mRNA upstream 485943 29888959 ~ 29898369 (-) False XLOC_013486
TCONS_00026597 mRNA upstream 486392 29889408 ~ 29898351 (-) False XLOC_013486
TCONS_00026600 mRNA upstream 519923 29922939 ~ 29925717 (-) True XLOC_013488
TCONS_00026601 mRNA upstream 555637 29958653 ~ 29961818 (-) False XLOC_013489
TCONS_00026594 other downstream 90299 29307525 ~ 29307641 (-) True XLOC_013484
TCONS_00026593 other downstream 184691 29213133 ~ 29213249 (-) True XLOC_013483
TCONS_00026592 other downstream 312766 29085058 ~ 29085174 (-) True XLOC_013482
TCONS_00026590 other downstream 602265 28795559 ~ 28795675 (-) True XLOC_013480
TCONS_00026588 other downstream 1073785 28320730 ~ 28324155 (-) True XLOC_013478
TCONS_00026598 other upstream 492595 29895611 ~ 29898361 (-) True XLOC_013486
TCONS_00026599 other upstream 515046 29918062 ~ 29919105 (-) True XLOC_013487
TCONS_00026611 other upstream 1451480 30854496 ~ 30855535 (-) True XLOC_013494
TCONS_00026625 other upstream 3122395 32525411 ~ 32527104 (-) True XLOC_013509
TCONS_00026632 other upstream 3687427 33090443 ~ 33093741 (-) False XLOC_013517

Expression Profile

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