RNA id: TU58087


Basic Information

Item Value
RNA id TU58087
length 353
lncRNA type inter_gene
GC content 0.53
exon number 1
gene id G51993
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 47901229 ~ 47901581 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gccaattgtaaactggggattattaggtgactgtgatggtttgagggccagattgggaatttagccaggacaccggggttaacacccctactcttacgataagtgccatgggatctttaatgacctcagagagtcagggcacccgtttaacgtcccatccgaaagacggcaccctacacagggcagtgtctcCAATCACTGctctggggcattgggatatttttaagaccaaaggaaagagtgcctcctactggccctccaacaccacttccagcagcatctggtctcccatccagggactgaccaggaccaaccctgcctagctccagaagcaagccagcagtggtatgcag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU58071 lncRNA downstream 9345 47891478 ~ 47891884 (-) True G51977
TU58008 lncRNA downstream 71177 47826968 ~ 47830052 (-) True G51914
TU57993 lncRNA downstream 94329 47806554 ~ 47806900 (-) True G51899
TU57893 lncRNA downstream 210459 47689120 ~ 47690770 (-) True G51802
TU57732 lncRNA downstream 516741 47383658 ~ 47384488 (-) True G51652
TU58111 lncRNA upstream 13367 47914948 ~ 47915246 (-) True G52017
TU58127 lncRNA upstream 23753 47925334 ~ 47925952 (-) True G52033
TU58781 lncRNA upstream 63810 47965391 ~ 47965788 (-) True G52630
TU58828 lncRNA upstream 123733 48025314 ~ 48031630 (-) True G52674
TU58844 lncRNA upstream 140051 48041632 ~ 48041867 (-) True G52690
XM_021603570.2 mRNA downstream 112936 47785638 ~ 47788293 (-) True LOC110524174
LOC110532355 mRNA downstream 167690 47725613 ~ 47733539 (-) True LOC110532355
XM_021603531.2 mRNA downstream 178829 47695182 ~ 47722400 (-) True LOC110524148
XM_021603540.2 mRNA downstream 184724 47695182 ~ 47716505 (-) False LOC110524148
XM_036979030.1 mRNA downstream 212163 47633880 ~ 47689066 (-) True LOC110524125
XM_021603649.2 mRNA upstream 141911 48043492 ~ 48049196 (-) True LOC110524205
XM_021603662.2 mRNA upstream 170248 48071829 ~ 48123356 (-) True LOC110524212
XM_021603717.2 mRNA upstream 317859 48219440 ~ 48247045 (-) False LOC110524242
XM_021603707.2 mRNA upstream 317859 48219440 ~ 48247048 (-) False LOC110524242
XM_021603724.2 mRNA upstream 317859 48219440 ~ 48247048 (-) True LOC110524242
TU57798 other downstream 340020 47542376 ~ 47561209 (-) True LOC110524104
TU57725 other downstream 522686 47377641 ~ 47378543 (-) True G51649
TU57327 other downstream 611548 47288939 ~ 47289681 (-) True G51285
TU57229 other downstream 782196 47064774 ~ 47119033 (-) False G51214
TU55801 other downstream 1951278 45948958 ~ 45949951 (-) True G49962
TU59011 other upstream 392527 48294108 ~ 48304136 (-) True LOC110524264
TU59630 other upstream 1082604 48984185 ~ 48985917 (-) True LOC110532382
TU61709 other upstream 2510053 50411634 ~ 50412128 (-) True G55408
TU61943 other upstream 2863782 50765363 ~ 50767431 (-) True G55627
TU61953 other upstream 2876166 50777747 ~ 50783844 (-) False LOC110524514

Expression Profile