RNA id: TU58198


Basic Information

Item Value
RNA id TU58198
length 304
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G52099
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 48042047 ~ 48042350 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

acttcaaacatctgctatctgagcagctaaccgatcgctgcagctgtacatagtctatcggtaaatagcccacccaattttacctacctcatccccatactgtttttatttatttacttttctgctcttttgcacaccaatatctctacctgtacatgaccatctgatcatttatcactccagtgttaatctgcaaaattgtaactattcgcctacctcctcatgccttttgcacacaatgtatatagactctctttttttctactgtgttattgacttgttaattgtttactccatgtgtaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU58185 lncRNA upstream 11205 48024330 ~ 48030842 (+) True G52086
TU58157 lncRNA upstream 97245 47944470 ~ 47944802 (+) True G52063
TU58142 lncRNA upstream 105354 47936388 ~ 47936693 (+) True G52048
TU58128 lncRNA upstream 115714 47925960 ~ 47926333 (+) True G52034
TU58077 lncRNA upstream 146002 47895827 ~ 47896045 (+) True G51983
TU58200 lncRNA downstream 2407 48044757 ~ 48044972 (+) True G52101
TU58201 lncRNA downstream 3153 48045503 ~ 48045740 (+) True G52102
TU58206 lncRNA downstream 12779 48055129 ~ 48055350 (+) True G52107
TU58274 lncRNA downstream 90915 48133265 ~ 48133465 (+) True G52169
TU58279 lncRNA downstream 96013 48138363 ~ 48138596 (+) True G52174
XM_021603625.2 mRNA upstream 28701 47983046 ~ 48013346 (+) False LOC110524199
XM_021603636.2 mRNA upstream 28701 47983046 ~ 48013346 (+) False LOC110524199
XM_036979097.1 mRNA upstream 28701 47983046 ~ 48013346 (+) True LOC110524199
XM_021603604.2 mRNA upstream 63742 47949736 ~ 47978305 (+) False rpgrip1l
XM_036979102.1 mRNA downstream 105049 48147399 ~ 48163741 (+) False LOC118964788
XM_036979105.1 mRNA downstream 105054 48147404 ~ 48163741 (+) False LOC118964788
XM_036979099.1 mRNA downstream 115219 48157569 ~ 48163741 (+) False LOC118964788
XM_036979108.1 mRNA downstream 116289 48158639 ~ 48163741 (+) True LOC118964788
XM_036979133.1 mRNA downstream 214517 48256867 ~ 48289561 (+) False LOC110524253
TU58177 other upstream 17089 48006674 ~ 48024958 (+) True G52080
TU56739 other upstream 783149 47227246 ~ 47258898 (+) True LOC110520864
TU56623 other upstream 1180583 46857908 ~ 46861464 (+) True LOC110524042
TU55851 other upstream 2049156 45992273 ~ 45992891 (+) False G50010
TU55850 other upstream 2049156 45992505 ~ 45992891 (+) True G50010
TU58443 other downstream 338192 48380542 ~ 48383257 (+) True G52324
TU59387 other downstream 851147 48893497 ~ 48893912 (+) True G53181
TU60888 other downstream 1995224 50037574 ~ 50083996 (+) True LOC118964841
TU62774 other downstream 3407472 51449822 ~ 51450935 (+) True LOC110524575
TU65446 other downstream 5623865 53666215 ~ 53671273 (+) True LOC118936380

Expression Profile