RNA id: TU58200


Basic Information

Item Value
RNA id TU58200
length 216
lncRNA type intronic
GC content 0.37
exon number 1
gene id G52101
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 48044757 ~ 48044972 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

attcctgcCCATGTGACATGTGTCTGTAACAGTCAAATCTAATTTGTTTGCCCTCAAGTGTTTTTTTTAGACTGTTATTTGGCATATCTCATTGCTTGCTAactactctgttgacagtttgacaagaacatgtggtaCCTATTTAGCTTGTTCAGGATTTACAAACAAATGAGTGAATGTGATAGAAAGTTAAACAGCTACCTAGGTAGCTAACTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU58198 lncRNA upstream 2407 48042047 ~ 48042350 (+) True G52099
TU58185 lncRNA upstream 13915 48024330 ~ 48030842 (+) True G52086
TU58157 lncRNA upstream 99955 47944470 ~ 47944802 (+) True G52063
TU58142 lncRNA upstream 108064 47936388 ~ 47936693 (+) True G52048
TU58128 lncRNA upstream 118424 47925960 ~ 47926333 (+) True G52034
TU58201 lncRNA downstream 531 48045503 ~ 48045740 (+) True G52102
TU58206 lncRNA downstream 10157 48055129 ~ 48055350 (+) True G52107
TU58274 lncRNA downstream 88293 48133265 ~ 48133465 (+) True G52169
TU58279 lncRNA downstream 93391 48138363 ~ 48138596 (+) True G52174
TU58294 lncRNA downstream 121642 48166614 ~ 48167114 (+) True G52187
XM_021603625.2 mRNA upstream 31411 47983046 ~ 48013346 (+) False LOC110524199
XM_021603636.2 mRNA upstream 31411 47983046 ~ 48013346 (+) False LOC110524199
XM_036979097.1 mRNA upstream 31411 47983046 ~ 48013346 (+) True LOC110524199
XM_021603604.2 mRNA upstream 66452 47949736 ~ 47978305 (+) False rpgrip1l
XM_036979102.1 mRNA downstream 102427 48147399 ~ 48163741 (+) False LOC118964788
XM_036979105.1 mRNA downstream 102432 48147404 ~ 48163741 (+) False LOC118964788
XM_036979099.1 mRNA downstream 112597 48157569 ~ 48163741 (+) False LOC118964788
XM_036979108.1 mRNA downstream 113667 48158639 ~ 48163741 (+) True LOC118964788
XM_036979133.1 mRNA downstream 211895 48256867 ~ 48289561 (+) False LOC110524253
TU58177 other upstream 19799 48006674 ~ 48024958 (+) True G52080
TU56739 other upstream 785859 47227246 ~ 47258898 (+) True LOC110520864
TU56623 other upstream 1183293 46857908 ~ 46861464 (+) True LOC110524042
TU55851 other upstream 2051866 45992273 ~ 45992891 (+) False G50010
TU58443 other downstream 335570 48380542 ~ 48383257 (+) True G52324
TU59387 other downstream 848525 48893497 ~ 48893912 (+) True G53181
TU60888 other downstream 1992602 50037574 ~ 50083996 (+) True LOC118964841
TU62774 other downstream 3404850 51449822 ~ 51450935 (+) True LOC110524575
TU65446 other downstream 5621243 53666215 ~ 53671273 (+) True LOC118936380

Expression Profile