RNA id: TU58274


Basic Information

Item Value
RNA id TU58274
length 201
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G52169
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 48133265 ~ 48133465 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTTCAATCCGACACTCTTGTTAATGTTTGACGTCAGGCAAAACGTCTTCAGCCACCGTAGGATGGAGAGCCGCTGGTTGGCATTTTTGACAgcggtgtctgtgtgggtgtaccaGGAAAGGACGTTAGAAGTTAGGTCCCCATGATATCAAAGCTTCTTACCATCTTCACTGCACCCCGTCGATATCGATTTTAAAAACTG

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU58206 lncRNA upstream 77915 48055129 ~ 48055350 (+) True G52107
TU58201 lncRNA upstream 87525 48045503 ~ 48045740 (+) True G52102
TU58200 lncRNA upstream 88293 48044757 ~ 48044972 (+) True G52101
TU58198 lncRNA upstream 90915 48042047 ~ 48042350 (+) True G52099
TU58185 lncRNA upstream 102423 48024330 ~ 48030842 (+) True G52086
TU58279 lncRNA downstream 4898 48138363 ~ 48138596 (+) True G52174
TU58294 lncRNA downstream 33149 48166614 ~ 48167114 (+) True G52187
TU58251 lncRNA downstream 39699 48173164 ~ 48187068 (+) True G52148
TU58306 lncRNA downstream 49219 48182684 ~ 48187583 (+) False G52199
TU58307 lncRNA downstream 49219 48182684 ~ 48187583 (+) True G52199
XM_021603625.2 mRNA upstream 119919 47983046 ~ 48013346 (+) False LOC110524199
XM_021603636.2 mRNA upstream 119919 47983046 ~ 48013346 (+) False LOC110524199
XM_036979097.1 mRNA upstream 119919 47983046 ~ 48013346 (+) True LOC110524199
XM_021603604.2 mRNA upstream 154960 47949736 ~ 47978305 (+) False rpgrip1l
XM_036979102.1 mRNA downstream 13934 48147399 ~ 48163741 (+) False LOC118964788
XM_036979105.1 mRNA downstream 13939 48147404 ~ 48163741 (+) False LOC118964788
XM_036979099.1 mRNA downstream 24104 48157569 ~ 48163741 (+) False LOC118964788
XM_036979108.1 mRNA downstream 25174 48158639 ~ 48163741 (+) True LOC118964788
XM_036979133.1 mRNA downstream 123402 48256867 ~ 48289561 (+) False LOC110524253
TU58177 other upstream 108307 48006674 ~ 48024958 (+) True G52080
TU56739 other upstream 874367 47227246 ~ 47258898 (+) True LOC110520864
TU56623 other upstream 1271801 46857908 ~ 46861464 (+) True LOC110524042
TU55851 other upstream 2140374 45992273 ~ 45992891 (+) False G50010
TU58443 other downstream 247077 48380542 ~ 48383257 (+) True G52324
TU59387 other downstream 760032 48893497 ~ 48893912 (+) True G53181
TU60888 other downstream 1904109 50037574 ~ 50083996 (+) True LOC118964841
TU62774 other downstream 3316357 51449822 ~ 51450935 (+) True LOC110524575
TU65446 other downstream 5532750 53666215 ~ 53671273 (+) True LOC118936380

Expression Profile