RNA id: TU58307


Basic Information

Item Value
RNA id TU58307
length 721
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G52199
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 48182684 ~ 48187583 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtgttatataagtattcatacacatagctcatataaacaaagacattccgtcgtaagaacacatacacccagccacaagactgaccccctctattGGTCGGATGCTCAGGATAAggctctgctgtgcaccaatggggcttctgctctggctagagcaaggcccgcctccaaccctccgaccagtcaagaagaccgaaacgacaagactactttattctatgtataaaaatgaatgtaaccgttgtataaggcctctttttcacctggctccttgacgagttatgtgaactaggtccgtgcacgtaaaactgcgggacaagatatctctgactcattaaaactgtcttttgttacaactgaaatccactctgtccagcgtccgtgatttggtctcaactctccagtatttaaacactaacagaacttggtagcagagtttggttattcttgaattcgatctattataagttagtgtgagaggacgagactgatcacggctaaaaaatcagacggaagagtgacttccccagccattcatcttgcctcaggaaatctCTCTATATaaggtgagcagagcccgttatatcgaaatctgcatattgtattatagcctaaaccaaattttgatcagaaagtactgggcgtgagtatgaatcggtgcccaaattttttacataagaacctaagacattgattaaagatatcttgttttgtaaaaaaa

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU58294 lncRNA upstream 15570 48166614 ~ 48167114 (+) True G52187
TU58279 lncRNA upstream 44088 48138363 ~ 48138596 (+) True G52174
TU58274 lncRNA upstream 49219 48133265 ~ 48133465 (+) True G52169
TU58206 lncRNA upstream 127334 48055129 ~ 48055350 (+) True G52107
TU58201 lncRNA upstream 136944 48045503 ~ 48045740 (+) True G52102
TU58335 lncRNA downstream 31871 48219454 ~ 48221949 (+) True G52222
TU58394 lncRNA downstream 136996 48324579 ~ 48324812 (+) True G52277
TU58401 lncRNA downstream 145686 48333269 ~ 48333547 (+) True G52284
TU58406 lncRNA downstream 152677 48340260 ~ 48340842 (+) True G52289
TU58409 lncRNA downstream 155515 48343098 ~ 48343350 (+) True G52292
XM_036979102.1 mRNA upstream 18943 48147399 ~ 48163741 (+) False LOC118964788
XM_036979105.1 mRNA upstream 18943 48147404 ~ 48163741 (+) False LOC118964788
XM_036979099.1 mRNA upstream 18943 48157569 ~ 48163741 (+) False LOC118964788
XM_036979108.1 mRNA upstream 18943 48158639 ~ 48163741 (+) True LOC118964788
XM_036979097.1 mRNA upstream 169338 47983046 ~ 48013346 (+) True LOC110524199
XM_036979133.1 mRNA downstream 69284 48256867 ~ 48289561 (+) False LOC110524253
XM_036979138.1 mRNA downstream 69284 48256867 ~ 48289561 (+) True LOC110524253
XM_036979164.1 mRNA downstream 296302 48483885 ~ 48509644 (+) False LOC110524291
XM_036979160.1 mRNA downstream 296303 48483886 ~ 48509644 (+) False LOC110524291
XM_036979176.1 mRNA downstream 364498 48552081 ~ 48590914 (+) True LOC110524302
TU58177 other upstream 157726 48006674 ~ 48024958 (+) True G52080
TU56739 other upstream 923786 47227246 ~ 47258898 (+) True LOC110520864
TU56623 other upstream 1321220 46857908 ~ 46861464 (+) True LOC110524042
TU55851 other upstream 2189793 45992273 ~ 45992891 (+) False G50010
TU58443 other downstream 192959 48380542 ~ 48383257 (+) True G52324
TU59387 other downstream 705914 48893497 ~ 48893912 (+) True G53181
TU60888 other downstream 1849991 50037574 ~ 50083996 (+) True LOC118964841
TU62774 other downstream 3262239 51449822 ~ 51450935 (+) True LOC110524575
TU65446 other downstream 5478632 53666215 ~ 53671273 (+) True LOC118936380

Expression Profile