RNA id: TU58394


Basic Information

Item Value
RNA id TU58394
length 234
lncRNA type intronic
GC content 0.37
exon number 1
gene id G52277
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 48324579 ~ 48324812 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tttaagatgagggatgaggattttttatatgagcatggccttatttctattacagcatattggatgactctcgTTCAtagtccattcacccagttcaatataacagcgataggtttaggctactgataCTCAAATgtcccctatacccatcatgacgttgctacaacctagtctatgaatgaaagtttacaacgcaGGTGCACACAGGTCGGGAGACAAATTTCAGGTgatgga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU58335 lncRNA upstream 102630 48219454 ~ 48221949 (+) True G52222
TU58313 lncRNA upstream 135622 48184127 ~ 48188957 (+) True G52201
TU58309 lncRNA upstream 136183 48183584 ~ 48188396 (+) True G52200
TU58306 lncRNA upstream 136996 48182684 ~ 48187583 (+) False G52199
TU58307 lncRNA upstream 136996 48182684 ~ 48187583 (+) True G52199
TU58401 lncRNA downstream 8457 48333269 ~ 48333547 (+) True G52284
TU58406 lncRNA downstream 15448 48340260 ~ 48340842 (+) True G52289
TU58409 lncRNA downstream 18286 48343098 ~ 48343350 (+) True G52292
TU58417 lncRNA downstream 29337 48354149 ~ 48354514 (+) True G52300
TU58487 lncRNA downstream 183632 48508444 ~ 48510535 (+) True LOC110524291
XM_036979133.1 mRNA upstream 35018 48256867 ~ 48289561 (+) False LOC110524253
XM_036979138.1 mRNA upstream 35018 48256867 ~ 48289561 (+) True LOC110524253
XM_036979102.1 mRNA upstream 160838 48147399 ~ 48163741 (+) False LOC118964788
XM_036979105.1 mRNA upstream 160838 48147404 ~ 48163741 (+) False LOC118964788
XM_036979099.1 mRNA upstream 160838 48157569 ~ 48163741 (+) False LOC118964788
XM_036979164.1 mRNA downstream 159073 48483885 ~ 48509644 (+) False LOC110524291
XM_036979160.1 mRNA downstream 159074 48483886 ~ 48509644 (+) False LOC110524291
XM_036979176.1 mRNA downstream 227269 48552081 ~ 48590914 (+) True LOC110524302
XM_021603847.2 mRNA downstream 266208 48591020 ~ 48596608 (+) True LOC110524313
XR_005051992.1 mRNA downstream 310683 48635495 ~ 48705096 (+) False cttnbp2
TU58177 other upstream 299621 48006674 ~ 48024958 (+) True G52080
TU56739 other upstream 1065681 47227246 ~ 47258898 (+) True LOC110520864
TU56623 other upstream 1463115 46857908 ~ 46861464 (+) True LOC110524042
TU55851 other upstream 2331688 45992273 ~ 45992891 (+) False G50010
TU58443 other downstream 55730 48380542 ~ 48383257 (+) True G52324
TU59387 other downstream 568685 48893497 ~ 48893912 (+) True G53181
TU60888 other downstream 1712762 50037574 ~ 50083996 (+) True LOC118964841
TU62774 other downstream 3125010 51449822 ~ 51450935 (+) True LOC110524575
TU65446 other downstream 5341403 53666215 ~ 53671273 (+) True LOC118936380

Expression Profile