RNA id: TU58409


Basic Information

Item Value
RNA id TU58409
length 253
lncRNA type intronic
GC content 0.50
exon number 1
gene id G52292
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 48343098 ~ 48343350 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtgagtaaaacatttcaacttgctaaccctcgcaaggctgcaggaccagacgacatccccagccgcgtcctcaaagcatgcgcagaccagctggctggtgtgtttacagacatattcaatcaatccttatcccagtctgctgttcccacatgcttcaagagagccactattgttcctgttcccaagaaagctaaggtaacttgagctaaacgactaccgccccgtagcactcacttccgtcatcatgaagtgc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU58406 lncRNA upstream 2256 48340260 ~ 48340842 (+) True G52289
TU58401 lncRNA upstream 9551 48333269 ~ 48333547 (+) True G52284
TU58394 lncRNA upstream 18286 48324579 ~ 48324812 (+) True G52277
TU58335 lncRNA upstream 121149 48219454 ~ 48221949 (+) True G52222
TU58313 lncRNA upstream 154141 48184127 ~ 48188957 (+) True G52201
TU58417 lncRNA downstream 10799 48354149 ~ 48354514 (+) True G52300
TU58487 lncRNA downstream 165094 48508444 ~ 48510535 (+) True LOC110524291
TU58525 lncRNA downstream 187097 48530447 ~ 48540888 (+) True G52395
TU58561 lncRNA downstream 230569 48573919 ~ 48574259 (+) True G52431
TU58520 lncRNA downstream 254846 48598196 ~ 48598851 (+) True G52390
XM_036979133.1 mRNA upstream 53537 48256867 ~ 48289561 (+) False LOC110524253
XM_036979138.1 mRNA upstream 53537 48256867 ~ 48289561 (+) True LOC110524253
XM_036979105.1 mRNA upstream 179357 48147404 ~ 48163741 (+) False LOC118964788
XM_036979164.1 mRNA downstream 140535 48483885 ~ 48509644 (+) False LOC110524291
XM_036979160.1 mRNA downstream 140536 48483886 ~ 48509644 (+) False LOC110524291
XM_036979176.1 mRNA downstream 208731 48552081 ~ 48590914 (+) True LOC110524302
XM_021603847.2 mRNA downstream 247670 48591020 ~ 48596608 (+) True LOC110524313
XR_005051992.1 mRNA downstream 292145 48635495 ~ 48705096 (+) False cttnbp2
TU58177 other upstream 318140 48006674 ~ 48024958 (+) True G52080
TU56739 other upstream 1084200 47227246 ~ 47258898 (+) True LOC110520864
TU56623 other upstream 1481634 46857908 ~ 46861464 (+) True LOC110524042
TU55851 other upstream 2350207 45992273 ~ 45992891 (+) False G50010
TU58443 other downstream 37192 48380542 ~ 48383257 (+) True G52324
TU59387 other downstream 550147 48893497 ~ 48893912 (+) True G53181
TU60888 other downstream 1694224 50037574 ~ 50083996 (+) True LOC118964841
TU62774 other downstream 3106472 51449822 ~ 51450935 (+) True LOC110524575
TU65446 other downstream 5322865 53666215 ~ 53671273 (+) True LOC118936380

Expression Profile