RNA id: TCONS_00026599


Basic Information

Item Value
RNA id TCONS_00026599
length 645
RNA type unprocessed_pseudogene
GC content 0.44
exon number 3
gene id XLOC_013487
representative True

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 29918062 ~ 29919105 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

attatCATAAATATGGACTGATTGGGGCGAGTGGTGACGCAGATCAGGAAGATTTTATTGTCCAGTTTGATGATGAACAGTTGGCACACGTGGACTTCAAAGAGCAAAAAGATGTTATTACATTACCTGAATTTGCTGATCTAGCTGTGTTTCAGCCATTATATGTGGATGCTAAAAGGGCATAATTCAACGGCAAAGCCTTCCTGGCTGTGCTTAGAGAGGTGTATGCCAGTTCACCTGAAGTACTTGAACCTCCCTTGAGCTCAATTTATCCTAAAAGTGATCCACAATTAAATGTCAAGAACACTCTGATCTGTCAAGTGACTGGATTCTTCCCTCCACCGGTCAGAGTCTTGTGGACCAAGAACAATGTGAATGTGACAGATGGATCAACTATCAGCAGATATTACCCTAACAAAGATGGCACAATGAACGTCTTTTCTTGACTGAGCTTCATTCCTGAGGAAGGAGACATTCATAGCTGTTTAGTGGAGCACAAAGCCCTTCAGCAACCTCAGACCAGAACATGGGaTGTGGAGGTAAAGCAGCCCAGCATTGGTCCATAAGTGTGGAGTTGGTCTTGCTCTCGGGCTACTGGGTTTTGCTACTGGGGTCTTTTTCACCGCAAAAGGAAACAACTGTAAC

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000144173

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00027355 lncRNA downstream 515046 29397940 ~ 29403016 (-) True XLOC_013485
TCONS_00027354 lncRNA downstream 1314947 28601593 ~ 28603115 (-) True XLOC_013479
TCONS_00026589 lncRNA downstream 1594276 28320730 ~ 28323786 (-) False XLOC_013478
TCONS_00027353 lncRNA downstream 1696314 28204344 ~ 28221748 (-) True XLOC_013477
TCONS_00026972 lncRNA downstream 2098156 27818134 ~ 27819906 (-) True XLOC_013475
TCONS_00027356 lncRNA upstream 833379 30752484 ~ 30753423 (-) True XLOC_013493
TCONS_00027357 lncRNA upstream 1041067 30960172 ~ 30961069 (-) True XLOC_013495
TCONS_00026613 lncRNA upstream 1130384 31049489 ~ 31051597 (-) True XLOC_013496
TCONS_00026973 lncRNA upstream 1805001 31724106 ~ 31724812 (-) True XLOC_013500
TCONS_00026974 lncRNA upstream 1813518 31732623 ~ 31737816 (-) True XLOC_013501
TCONS_00026596 mRNA downstream 19693 29888959 ~ 29898369 (-) False XLOC_013486
TCONS_00026597 mRNA downstream 19711 29889408 ~ 29898351 (-) False XLOC_013486
TCONS_00026595 mRNA downstream 21695 29885190 ~ 29896367 (-) False XLOC_013486
TCONS_00026591 mRNA downstream 979150 28937061 ~ 28938912 (-) True XLOC_013481
TCONS_00026587 mRNA downstream 2020845 27843840 ~ 27897217 (-) True XLOC_013476
TCONS_00026600 mRNA upstream 3834 29922939 ~ 29925717 (-) True XLOC_013488
TCONS_00026601 mRNA upstream 39548 29958653 ~ 29961818 (-) False XLOC_013489
TCONS_00026602 mRNA upstream 39952 29959057 ~ 29962234 (-) False XLOC_013489
TCONS_00026603 mRNA upstream 40019 29959124 ~ 29961784 (-) True XLOC_013489
TCONS_00026604 mRNA upstream 49100 29968205 ~ 30020879 (-) False XLOC_013490
TCONS_00026598 other downstream 19701 29895611 ~ 29898361 (-) True XLOC_013486
TCONS_00026594 other downstream 610421 29307525 ~ 29307641 (-) True XLOC_013484
TCONS_00026593 other downstream 704813 29213133 ~ 29213249 (-) True XLOC_013483
TCONS_00026592 other downstream 832888 29085058 ~ 29085174 (-) True XLOC_013482
TCONS_00026590 other downstream 1122387 28795559 ~ 28795675 (-) True XLOC_013480
TCONS_00026611 other upstream 935391 30854496 ~ 30855535 (-) True XLOC_013494
TCONS_00026625 other upstream 2606306 32525411 ~ 32527104 (-) True XLOC_013509
TCONS_00026632 other upstream 3171338 33090443 ~ 33093741 (-) False XLOC_013517
TCONS_00026656 other upstream 5654076 35573181 ~ 35573295 (-) True XLOC_013536
TCONS_00026662 other upstream 6536202 36455307 ~ 36465466 (-) True XLOC_013541

Expression Profile

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