RNA id: TU58525


Basic Information

Item Value
RNA id TU58525
length 558
lncRNA type inter_gene
GC content 0.41
exon number 4
gene id G52395
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 48530447 ~ 48540888 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCCTGGCTAAGCATGGGAGTGCACCAacaccctccaccctctccctccatttatcTGGCCCTGTGGGACCGGGTCTgccacagtctctctctgacctctcagCTCCCAGATGGAACACAATGGGTCAACGGGGAGAAGACCTGGAGAGACCAGCATATACCTCACCCTAGCCACTGTATCAAGACACACTTCAAAAATATGTTGCACTGATTAAGTGGATAGAGGATCTTACAGACGCATCACCATCagttctcagttgtcttgaaagctcCATAAATCCGGAGAATGACAGATTTGATGACAACATTTTCCCACAAAGGactgccgcgccaccttcctgttcaagtcagcacagcacaacaaggctgctgattgtcccacacacctgtcaccatcgtcttgcgcacctgcgcctcatgacactcacctggactccatcatctccttgattatcttccctatatctgtcactctcttggttctttcctcaggtgttattgactctgttttcacgtctgtgcgttgtttgtgttacgtgtttattgtttaatttattta

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU58487 lncRNA upstream 19912 48508444 ~ 48510535 (+) True LOC110524291
TU58417 lncRNA upstream 175933 48354149 ~ 48354514 (+) True G52300
TU58409 lncRNA upstream 187097 48343098 ~ 48343350 (+) True G52292
TU58406 lncRNA upstream 189605 48340260 ~ 48340842 (+) True G52289
TU58401 lncRNA upstream 196900 48333269 ~ 48333547 (+) True G52284
TU58561 lncRNA downstream 33031 48573919 ~ 48574259 (+) True G52431
TU58520 lncRNA downstream 57308 48598196 ~ 48598851 (+) True G52390
TU58580 lncRNA downstream 85710 48626598 ~ 48626797 (+) True G52450
TU58684 lncRNA downstream 276860 48817748 ~ 48819992 (+) False G52546
TU58686 lncRNA downstream 276860 48817748 ~ 48819992 (+) True G52546
XM_036979164.1 mRNA upstream 20803 48483885 ~ 48509644 (+) False LOC110524291
XM_036979160.1 mRNA upstream 20803 48483886 ~ 48509644 (+) False LOC110524291
XM_036979133.1 mRNA upstream 240886 48256867 ~ 48289561 (+) False LOC110524253
XM_036979138.1 mRNA upstream 240886 48256867 ~ 48289561 (+) True LOC110524253
XM_036979105.1 mRNA upstream 366706 48147404 ~ 48163741 (+) False LOC118964788
XM_036979176.1 mRNA downstream 11193 48552081 ~ 48590914 (+) True LOC110524302
XM_021603847.2 mRNA downstream 50132 48591020 ~ 48596608 (+) True LOC110524313
XR_005051992.1 mRNA downstream 94607 48635495 ~ 48705096 (+) False cttnbp2
XM_036979261.1 mRNA downstream 94611 48635499 ~ 48706569 (+) True cttnbp2
LOC110532376 mRNA downstream 218151 48759039 ~ 48798504 (+) True LOC110532376
TU58443 other upstream 147190 48380542 ~ 48383257 (+) True G52324
TU58177 other upstream 505489 48006674 ~ 48024958 (+) True G52080
TU56739 other upstream 1271549 47227246 ~ 47258898 (+) True LOC110520864
TU56623 other upstream 1668983 46857908 ~ 46861464 (+) True LOC110524042
TU55850 other upstream 2537556 45992505 ~ 45992891 (+) True G50010
TU59387 other downstream 352609 48893497 ~ 48893912 (+) True G53181
TU60888 other downstream 1496686 50037574 ~ 50083996 (+) True LOC118964841
TU62774 other downstream 2908934 51449822 ~ 51450935 (+) True LOC110524575
TU65446 other downstream 5125327 53666215 ~ 53671273 (+) True LOC118936380
TU65626 other downstream 5447252 53988140 ~ 53988597 (+) True G59031

Expression Profile