RNA id: TU59188


Basic Information

Item Value
RNA id TU59188
length 515
lncRNA type antisense_over
GC content 0.61
exon number 2
gene id G53008
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 48555819 ~ 48557902 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGCCACTGCCTCAGTTGTCTGCTCTCCGACCTTTGACCTCACAGTCACCTGATAGGGCCGTCCAGGGGTCAGGCCGCTGAAGATCACTTCAGTGGCGTTGGGGGGAAGCTTCCTATCCTGGTTGGCTGAGCCTAGGGTTGCCAGGGAGACCAGGTATGCATCCACGCCGCCCCTAGCATTGACCCAGGAGGCCCTCAGGGTGTCCAGACTGCCGTGGTTCTCCAAGAAGAGCTTGGTTACCGCCACAGGAACTGTGACTGCTTGTTTGGAGATGGCGTTCTGGAGGCCTTCAGCCTCAGTCACCACGGTGACGGTGTACAGGGTCCCAGGCAACAGGTCGTAAAGGGTGTGGGAGGTGACACTACTCTTAAGGGTGACGTTCCTGACTAGGGCGCCCTGCTGCTCCCTCAGTAGCACCCTGAAACCCTCTCTCCTGCCTGGACCGGGCTGCCAGGAAACACCCAGGCTGCTGGAGGAGGGTGAGAGCTGGAGGCCGCTGACAGCTGAGGGAGCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU59132 lncRNA downstream 45341 48469168 ~ 48510478 (-) True G52956
TU59165 lncRNA downstream 49728 48505510 ~ 48506091 (-) True G52985
TU59152 lncRNA downstream 56192 48495624 ~ 48499627 (-) False G52973
TU59150 lncRNA downstream 56192 48496385 ~ 48499627 (-) False G52973
TU59149 lncRNA downstream 56192 48498802 ~ 48499627 (-) True G52973
TU59745 lncRNA upstream 555111 49113013 ~ 49113261 (-) True G53524
TU59763 lncRNA upstream 576039 49133941 ~ 49134182 (-) True G53540
TU59764 lncRNA upstream 576694 49134596 ~ 49135356 (-) True G53541
TU59788 lncRNA upstream 612270 49170172 ~ 49170575 (-) True G53565
TU59759 lncRNA upstream 619947 49177849 ~ 49202748 (-) True G53537
XM_021603794.2 mRNA downstream 92164 48440247 ~ 48463655 (-) True LOC110524285
XM_021603766.2 mRNA downstream 159438 48313665 ~ 48396381 (-) True LOC110524273
XM_036979153.1 mRNA downstream 234450 48313665 ~ 48321369 (-) False LOC110524273
XM_021603755.2 mRNA downstream 250990 48291626 ~ 48304829 (-) False LOC110524264
XM_021603724.2 mRNA downstream 308771 48219440 ~ 48247048 (-) True LOC110524242
XM_036979184.1 mRNA upstream 40276 48598178 ~ 48623414 (-) False nup160
XM_036979191.1 mRNA upstream 40276 48598178 ~ 48623416 (-) True nup160
XM_036979278.1 mRNA upstream 149080 48706982 ~ 48747738 (-) False LOC110532369
XM_036979287.1 mRNA upstream 149080 48706982 ~ 48748537 (-) True LOC110532369
XM_036979314.1 mRNA upstream 256903 48814805 ~ 48892167 (-) False LOC110524343
TU59011 other downstream 251683 48294108 ~ 48304136 (-) True LOC110524264
TU57798 other downstream 994610 47542376 ~ 47561209 (-) True LOC110524104
TU57725 other downstream 1177276 47377641 ~ 47378543 (-) True G51649
TU57327 other downstream 1266138 47288939 ~ 47289681 (-) True G51285
TU57229 other downstream 1436786 47064774 ~ 47119033 (-) False G51214
TU59630 other upstream 426283 48984185 ~ 48985917 (-) True LOC110532382
TU61709 other upstream 1853732 50411634 ~ 50412128 (-) True G55408
TU61943 other upstream 2207461 50765363 ~ 50767431 (-) True G55627
TU61953 other upstream 2219845 50777747 ~ 50783844 (-) False LOC110524514
TU61955 other upstream 2219845 50777747 ~ 50792069 (-) False LOC110524514

Expression Profile