RNA id: TU59788


Basic Information

Item Value
RNA id TU59788
length 404
lncRNA type inter_gene
GC content 0.52
exon number 1
gene id G53565
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 49170172 ~ 49170575 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tatatccttcctgtttggccctgggtatcatcggatggggccacagtgtctcctgacccctcctgtctcagcctccagtatttatgctgcagtagtttatgtgtcggggggctagggtcagtttgctatatctggagtacttctcctgtcttatccggtgtcctgtgtgaattcaagtatgctctctctaattctctctttctttctctctctcggaggacctgagccctaagaccatgcctcaggactacctggcatgatgactctttgctgtccccagtccacctggccgtgctgctgctccagtttcaactgttctgcctgcggctatggaatcctgacctgttcaccggacgtgctacctgtcccagacctgctgttttcaactctctagagacagcagg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU59764 lncRNA downstream 34816 49134596 ~ 49135356 (-) True G53541
TU59763 lncRNA downstream 35990 49133941 ~ 49134182 (-) True G53540
TU59745 lncRNA downstream 56911 49113013 ~ 49113261 (-) True G53524
TU59188 lncRNA downstream 612270 48555819 ~ 48557902 (-) True G53008
TU59165 lncRNA downstream 664081 48505510 ~ 48506091 (-) True G52985
TU59759 lncRNA upstream 7274 49177849 ~ 49202748 (-) True G53537
TU59878 lncRNA upstream 108448 49279023 ~ 49279344 (-) True G53651
TU59879 lncRNA upstream 111085 49281660 ~ 49281864 (-) True G53652
TU59882 lncRNA upstream 112311 49282886 ~ 49283092 (-) True G53655
TU59893 lncRNA upstream 118624 49289199 ~ 49289470 (-) True G53666
XM_021603973.2 mRNA downstream 65437 49098552 ~ 49104735 (-) True LOC110524381
XM_021603952.2 mRNA downstream 89458 49067489 ~ 49080714 (-) True LOC110524368
XM_021603960.2 mRNA downstream 90279 49067489 ~ 49079893 (-) False LOC110524368
XM_036979352.1 mRNA downstream 125915 48971580 ~ 49044257 (-) False LOC110532382
XM_036979340.1 mRNA downstream 212111 48901602 ~ 48958061 (-) True LOC110524359
XM_036979383.1 mRNA upstream 9557 49180132 ~ 49208517 (-) True LOC110524388
NM_001165141.2 mRNA upstream 54137 49224712 ~ 49228631 (-) True cbpa1
LOC110532387 mRNA upstream 593420 49763995 ~ 49822972 (-) True LOC110532387
XM_036979394.1 mRNA upstream 677803 49848378 ~ 49876492 (-) True LOC110524413
XM_021604073.2 mRNA upstream 1089829 50260404 ~ 50270301 (-) True LOC110524441
TU59630 other downstream 184255 48984185 ~ 48985917 (-) True LOC110532382
TU59011 other downstream 866036 48294108 ~ 48304136 (-) True LOC110524264
TU57798 other downstream 1608963 47542376 ~ 47561209 (-) True LOC110524104
TU57725 other downstream 1791629 47377641 ~ 47378543 (-) True G51649
TU57327 other downstream 1880491 47288939 ~ 47289681 (-) True G51285
TU61709 other upstream 1241059 50411634 ~ 50412128 (-) True G55408
TU61943 other upstream 1594788 50765363 ~ 50767431 (-) True G55627
TU61953 other upstream 1607172 50777747 ~ 50783844 (-) False LOC110524514
TU61955 other upstream 1607172 50777747 ~ 50792069 (-) False LOC110524514
TU61958 other upstream 1607172 50777747 ~ 50783844 (-) True LOC110524514

Expression Profile