RNA id: TU60371


Basic Information

Item Value
RNA id TU60371
length 261
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G54131
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 49380105 ~ 49380365 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

catgtattgtgtaacatgaagatcatcaaaggttagtgattaatttgatctctatttctgctttttgtgactcatctctttggctggaaaaatggctgtgtttttctgtggcttggtggtgacctaacataatcgtttgtggtgctttcgctgtaaatcctttttgaaatcagacactgtggctggattaacgagaattgtatctttaaaatggtgtaaaatacttgtatgcttgaggaattttaattatgagatttttgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU59987 lncRNA downstream 20785 49359002 ~ 49359320 (-) True G53759
TU59986 lncRNA downstream 21550 49358334 ~ 49358555 (-) True G53758
TU59904 lncRNA downstream 79891 49299951 ~ 49300214 (-) True G53677
TU59893 lncRNA downstream 90635 49289199 ~ 49289470 (-) True G53666
TU59882 lncRNA downstream 97013 49282886 ~ 49283092 (-) True G53655
TU60385 lncRNA upstream 10940 49391305 ~ 49391568 (-) True G54145
TU60399 lncRNA upstream 29933 49410298 ~ 49410508 (-) True G54159
TU60400 lncRNA upstream 30281 49410646 ~ 49410963 (-) True G54160
TU60404 lncRNA upstream 33615 49413980 ~ 49414198 (-) True G54164
TU60411 lncRNA upstream 41956 49422321 ~ 49422587 (-) True G54171
NM_001165141.2 mRNA downstream 151474 49224712 ~ 49228631 (-) True cbpa1
XM_036979383.1 mRNA downstream 171588 49180132 ~ 49208517 (-) True LOC110524388
XM_021603973.2 mRNA downstream 275370 49098552 ~ 49104735 (-) True LOC110524381
XM_021603952.2 mRNA downstream 299391 49067489 ~ 49080714 (-) True LOC110524368
XM_021603960.2 mRNA downstream 300212 49067489 ~ 49079893 (-) False LOC110524368
LOC110532387 mRNA upstream 383630 49763995 ~ 49822972 (-) True LOC110532387
XM_036979394.1 mRNA upstream 468013 49848378 ~ 49876492 (-) True LOC110524413
XM_021604073.2 mRNA upstream 880039 50260404 ~ 50270301 (-) True LOC110524441
XM_036979433.1 mRNA upstream 987201 50367566 ~ 50374531 (-) False LOC110524445
XM_021604086.2 mRNA upstream 987209 50367574 ~ 50374531 (-) True LOC110524445
TU59630 other downstream 394188 48984185 ~ 48985917 (-) True LOC110532382
TU59011 other downstream 1075969 48294108 ~ 48304136 (-) True LOC110524264
TU57798 other downstream 1818896 47542376 ~ 47561209 (-) True LOC110524104
TU57725 other downstream 2001562 47377641 ~ 47378543 (-) True G51649
TU57327 other downstream 2090424 47288939 ~ 47289681 (-) True G51285
TU61709 other upstream 1031269 50411634 ~ 50412128 (-) True G55408
TU61943 other upstream 1384998 50765363 ~ 50767431 (-) True G55627
TU61953 other upstream 1397382 50777747 ~ 50783844 (-) False LOC110524514
TU61955 other upstream 1397382 50777747 ~ 50792069 (-) False LOC110524514
TU61958 other upstream 1397382 50777747 ~ 50783844 (-) True LOC110524514

Expression Profile