RNA id: TU60760


Basic Information

Item Value
RNA id TU60760
length 240
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G54507
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 49946607 ~ 49946846 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cagatattgttgtgaagaagtttaaagccggatttggatacaaaaagatttcccaagctttaaacatcccaaggagcactgtgcaagcgataatattgaaatggaaggagtatcagaccactgcaaatctaccaagacctggccgtccatctaaactttcagctcatacaaggagaagactgatcagagatgcagccaagaggcccatgatcactctggatgaactgcagagatctacag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU60734 lncRNA upstream 19463 49926919 ~ 49927144 (+) True G54481
TU60729 lncRNA upstream 22210 49924170 ~ 49924397 (+) True G54476
TU60725 lncRNA upstream 23977 49922371 ~ 49922630 (+) True G54472
TU60281 lncRNA upstream 150399 49793247 ~ 49796208 (+) True G54041
TU60128 lncRNA upstream 360741 49554714 ~ 49585866 (+) True G53899
TU60785 lncRNA downstream 19238 49966084 ~ 49966283 (+) True G54532
TU60790 lncRNA downstream 21986 49968832 ~ 49969034 (+) True G54537
TU60824 lncRNA downstream 40546 49987392 ~ 49987606 (+) True G54571
TU60887 lncRNA downstream 90728 50037574 ~ 50184257 (+) False LOC118964841
TU60900 lncRNA downstream 102248 50049094 ~ 50065311 (+) True G54645
XR_005052020.1 mRNA upstream 97628 49847620 ~ 49848979 (+) True LOC118964840
XR_005052016.1 mRNA upstream 112604 49823916 ~ 49834003 (+) False LOC110524421
XR_005052021.1 mRNA downstream 90677 50037523 ~ 50083540 (+) False LOC118964841
XM_021604059.2 mRNA downstream 279510 50226356 ~ 50231065 (+) True LOC110524434
XM_021604100.2 mRNA downstream 508710 50455556 ~ 50509791 (+) False LOC110524453
XM_021604143.2 mRNA downstream 583802 50530648 ~ 50592851 (+) False LOC110524456
XM_036979468.1 mRNA downstream 583802 50530648 ~ 50592851 (+) False LOC110524456
TU59387 other upstream 1052695 48893497 ~ 48893912 (+) True G53181
TU58443 other upstream 1563350 48380542 ~ 48383257 (+) True G52324
TU58177 other upstream 1921649 48006674 ~ 48024958 (+) True G52080
TU56739 other upstream 2687709 47227246 ~ 47258898 (+) True LOC110520864
TU56623 other upstream 3085143 46857908 ~ 46861464 (+) True LOC110524042
TU60888 other downstream 90728 50037574 ~ 50083996 (+) True LOC118964841
TU62774 other downstream 1502976 51449822 ~ 51450935 (+) True LOC110524575
TU65446 other downstream 3719369 53666215 ~ 53671273 (+) True LOC118936380
TU65626 other downstream 4041294 53988140 ~ 53988597 (+) True G59031
TU65668 other downstream 4098003 54044849 ~ 54062254 (+) False LOC110525327

Expression Profile