RNA id: TU60789


Basic Information

Item Value
RNA id TU60789
length 906
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G54536
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 49967643 ~ 49968548 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cttaaagattttGGTATACCAGcgtaacccatccaacttgaaggagctggagcagttttgccttaaaGAAAGGGCAAAAATCACAGTggatagatgtgccaagcttatagaaaaaatgccaaggggggtgaatactttcgcaagccactgtatctgtACTATTCGTCCTtccatttcctttgttaatatggactcttttgacctaaattgcttttgttttatagatgagtattGAAATGCATGGCCTCCAAAGACActtttaaaagtgtcccatacaatatgctgtacctatgttatacCTGAAAAGGCAGTTGTAAATTATTCTGTCCTAGTTAAAAACAAGTTATCATGCAGTAGGTTTTGATAAAATGTCCAATATCCTCATCCATGTGGAAAGAGCAATTGTCAAGAGAATTTTGTTCAATGTTAACTTCAATTAAAATACTCTGTAactaagaatttgtaaggttcttattaaaatgaaacagacagaggccAGGCTACTTAGTCATCAGGTTTATTTACGAGAGCTCTGCCTGTCATTTCCTGTACATTGGTCTATATACCTCACATTATATCATAAATGTGCCTCCTCCTCTCAGAAACCATGACAATATAGTTTACAAGTCTTCTCCTACTCAtacattgtctgccacctgttacacaatctactacaagcccaaggtctctcccctccctaggtggggacagaatgtcctgtaaggaacacagtagtacagcttgtctgtcgatagctcctcttatcatttgtttcacacttgcaccctgcttacatactaaaaaggaacaaaaagtccttgttctaattctgaCTAGAACTACACACATCAGATTTAGCTTTATGATTCTAATACATTTCAATCATAcaatcatacagtgacaggg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU60781 lncRNA downstream 4802 49962642 ~ 49962841 (-) True G54528
TU60766 lncRNA downstream 17732 49949173 ~ 49949911 (-) True G54513
TU60676 lncRNA downstream 66222 49851044 ~ 49901421 (-) True G54425
TU60662 lncRNA downstream 126647 49827425 ~ 49840996 (-) True G54411
TU60613 lncRNA downstream 261432 49701222 ~ 49706211 (-) True G54367
TU60825 lncRNA upstream 18647 49987195 ~ 49987566 (-) True G54572
TU60843 lncRNA upstream 29637 49998185 ~ 49998403 (-) True G54590
TU60865 lncRNA upstream 40982 50009530 ~ 50009769 (-) True G54612
TU60868 lncRNA upstream 43961 50012509 ~ 50012738 (-) True G54615
TU61696 lncRNA upstream 418458 50387006 ~ 50387249 (-) True G55395
XM_036979394.1 mRNA downstream 91151 49848378 ~ 49876492 (-) True LOC110524413
LOC110532387 mRNA downstream 144671 49763995 ~ 49822972 (-) True LOC110532387
NM_001165141.2 mRNA downstream 739012 49224712 ~ 49228631 (-) True cbpa1
XM_036979383.1 mRNA downstream 759126 49180132 ~ 49208517 (-) True LOC110524388
XM_021603973.2 mRNA downstream 862908 49098552 ~ 49104735 (-) True LOC110524381
XM_021604073.2 mRNA upstream 291856 50260404 ~ 50270301 (-) True LOC110524441
XM_036979433.1 mRNA upstream 399018 50367566 ~ 50374531 (-) False LOC110524445
XM_021604086.2 mRNA upstream 399026 50367574 ~ 50374531 (-) True LOC110524445
XM_036979494.1 mRNA upstream 750088 50718636 ~ 50720968 (-) False LOC110524488
XM_021604198.2 mRNA upstream 750088 50718636 ~ 50752172 (-) True LOC110524488
TU59630 other downstream 981726 48984185 ~ 48985917 (-) True LOC110532382
TU59011 other downstream 1663507 48294108 ~ 48304136 (-) True LOC110524264
TU57798 other downstream 2406434 47542376 ~ 47561209 (-) True LOC110524104
TU57725 other downstream 2589100 47377641 ~ 47378543 (-) True G51649
TU57327 other downstream 2677962 47288939 ~ 47289681 (-) True G51285
TU61709 other upstream 443086 50411634 ~ 50412128 (-) True G55408
TU61943 other upstream 796815 50765363 ~ 50767431 (-) True G55627
TU61953 other upstream 809199 50777747 ~ 50783844 (-) False LOC110524514
TU61955 other upstream 809199 50777747 ~ 50792069 (-) False LOC110524514
TU61958 other upstream 809199 50777747 ~ 50783844 (-) True LOC110524514

Expression Profile