RNA id: TU61943


Basic Information

Item Value
RNA id TU61943
length 599
RNA type TUCP
GC content 0.46
exon number 2
gene id G55627
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 50765363 ~ 50767431 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gggtctgctgtccggacctctggcagtctctatgggggtgccacagggttcaattattggaccgactctcttctctgtatacatcaatgaggtcgctcttgctgctggtgagtctctgatccacctctatgcagacgacaccattctgtatacttctggcccttctttggacactgtgttaacaaccctccaggcaagcttcaatgccatacaactctccttccgtggcctccaattgctcttaaatacaagtaaaactaaatgcatgctcttcaaccgatcgctacctgtacctacccgcctgtccaacattactactctggacggctctgacttagaatacgtggacaactacaaatacttaggtgtctggttagactgtaaactctccttccagacccatatcaaacatctccaatccaaagttaaatctagaattggcttcctattttgcaacaaagcatccttcactcatgctgccaaacatacccttgtaaaactgaccatcctaccaatcctcgactttggcgatgtcatttacaaaatagcctccaataccctactcaacaaattggatgcagtctatcacagtgcaatcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU61594 lncRNA downstream 19909 50744255 ~ 50745454 (-) True G55298
TU61927 lncRNA downstream 32250 50730182 ~ 50733113 (-) True G55611
TU61864 lncRNA downstream 126221 50638913 ~ 50639142 (-) True G55553
TU61718 lncRNA downstream 340620 50424485 ~ 50424743 (-) True G55417
TU61717 lncRNA downstream 341523 50423621 ~ 50423840 (-) True G55416
TU61990 lncRNA upstream 84775 50852206 ~ 50852412 (-) True G55665
TU62083 lncRNA upstream 122993 50890424 ~ 50891828 (-) True G55753
TU62085 lncRNA upstream 125886 50893317 ~ 50896831 (-) True G55755
TU62170 lncRNA upstream 226254 50993685 ~ 50993951 (-) True G55840
TU62335 lncRNA upstream 274000 51041431 ~ 51144424 (-) True zgc:101566
XM_021604198.2 mRNA downstream 13191 50718636 ~ 50752172 (-) True LOC110524488
XM_036979494.1 mRNA downstream 44395 50718636 ~ 50720968 (-) False LOC110524488
XM_036979433.1 mRNA downstream 390832 50367566 ~ 50374531 (-) False LOC110524445
XM_021604086.2 mRNA downstream 390832 50367574 ~ 50374531 (-) True LOC110524445
XM_021604073.2 mRNA downstream 495062 50260404 ~ 50270301 (-) True LOC110524441
LOC110524514 mRNA upstream 10285 50777716 ~ 50785039 (-) False LOC110524514
XM_036979533.1 mRNA upstream 41282 50808713 ~ 50848386 (-) False LOC110532393
XM_036979530.1 mRNA upstream 41282 50808713 ~ 50849546 (-) False LOC110532393
XM_036979523.1 mRNA upstream 41282 50808713 ~ 50850423 (-) False LOC110532393
XM_036979517.1 mRNA upstream 41282 50808713 ~ 50850668 (-) True LOC110532393
TU61709 other downstream 353235 50411634 ~ 50412128 (-) True G55408
TU59630 other downstream 1779446 48984185 ~ 48985917 (-) True LOC110532382
TU59011 other downstream 2461227 48294108 ~ 48304136 (-) True LOC110524264
TU57798 other downstream 3204154 47542376 ~ 47561209 (-) True LOC110524104
TU57725 other downstream 3386820 47377641 ~ 47378543 (-) True G51649
TU61953 other upstream 10316 50777747 ~ 50783844 (-) False LOC110524514
TU61955 other upstream 10316 50777747 ~ 50792069 (-) False LOC110524514
TU61958 other upstream 10316 50777747 ~ 50783844 (-) True LOC110524514
TU62721 other upstream 633296 51400727 ~ 51404343 (-) False G56372
TU63128 other upstream 979186 51746617 ~ 51747220 (-) True G56764

Expression Profile