RNA id: TCONS_00026610


Basic Information

Item Value
RNA id TCONS_00026610
length 609
RNA type mRNA
GC content 0.48
exon number 6
gene id XLOC_013492
representative True

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 30500690 ~ 30504652 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGACATACTTTAGGCACGGTGAATCCTACTGTAAGATGCTGCTGCACGCCGCTAAATATCCTCACTGCGCGGTGAACGGACTGCTGGTCGCCGAGAAACACAAGAAGAAGGACAATCCCAGAGACTCGGTACTCTGCGTGGATTGTGTGCCACTTTTCCACGGGGCTCTGGCGCTGGCCCCCATGCTGGAGGTAGCTCTTACGTTGATTGATACATGGTGCAAAGAGAACAAGTATGTCATTGCTGGATACTACCAAGCAAATGAACGTATAAAGGAAACCAGACCAAACCAGGTGGCTGAGAAGGTCGCTGCAAGAATCTCTGAAAATTTCAGCGAGGCTGCCATGATAATGATGGACAACAGCAGATTCACTATGGAATGTTTTGTACCAGTTCTCTTCATCTATGATCACCATGACAACAAGTGGAAGTGCAGGGAGCCAAGCACCGACTGCTTTGAGGATTGGCTGGAGGCACAGAAGATCACTGCAGCCCTTTTAGAAAACAAATCATACGAGAGTCTTGTGGACTTTGACAACCATCTGGACGACCTACGAAATGACTGGACCAACCCCGAGATCAATAAATCTGTATTACATCTATGCTGA

Function

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0072546 endoplasmic reticulum membrane protein complex cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-2692 Predicted to be part of EMC complex. Is expressed in pigment cell. Orthologous to human EMC8 (ER membrane protein complex subunit 8).

Ensembl:

ensembl_id ENSDART00000129509

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00027355 lncRNA downstream 1098704 29397940 ~ 29403016 (-) True XLOC_013485
TCONS_00027354 lncRNA downstream 1898605 28601593 ~ 28603115 (-) True XLOC_013479
TCONS_00026589 lncRNA downstream 2177934 28320730 ~ 28323786 (-) False XLOC_013478
TCONS_00027353 lncRNA downstream 2279972 28204344 ~ 28221748 (-) True XLOC_013477
TCONS_00026972 lncRNA downstream 2681814 27818134 ~ 27819906 (-) True XLOC_013475
TCONS_00027356 lncRNA upstream 247897 30752484 ~ 30753423 (-) True XLOC_013493
TCONS_00027357 lncRNA upstream 455585 30960172 ~ 30961069 (-) True XLOC_013495
TCONS_00026613 lncRNA upstream 544902 31049489 ~ 31051597 (-) True XLOC_013496
TCONS_00026973 lncRNA upstream 1219519 31724106 ~ 31724812 (-) True XLOC_013500
TCONS_00026974 lncRNA upstream 1228036 31732623 ~ 31737816 (-) True XLOC_013501
TCONS_00026608 mRNA downstream 2231 30481030 ~ 30499489 (-) True XLOC_013491
TCONS_00026605 mRNA downstream 480241 29969732 ~ 30021479 (-) False XLOC_013490
TCONS_00026604 mRNA downstream 480841 29968205 ~ 30020879 (-) False XLOC_013490
TCONS_00026612 mRNA upstream 528535 31033122 ~ 31051847 (-) False XLOC_013496
TCONS_00026614 mRNA upstream 585370 31089957 ~ 31105391 (-) True XLOC_013497
TCONS_00026615 mRNA upstream 721701 31226288 ~ 31227615 (-) True XLOC_013498
TCONS_00026616 mRNA upstream 794489 31299076 ~ 31423569 (-) True XLOC_013499
TCONS_00026617 mRNA upstream 1408172 31912759 ~ 31916845 (-) True XLOC_013502
TCONS_00026599 other downstream 582615 29918062 ~ 29919105 (-) True XLOC_013487
TCONS_00026598 other downstream 603359 29895611 ~ 29898361 (-) True XLOC_013486
TCONS_00026594 other downstream 1194079 29307525 ~ 29307641 (-) True XLOC_013484
TCONS_00026593 other downstream 1288471 29213133 ~ 29213249 (-) True XLOC_013483
TCONS_00026592 other downstream 1416546 29085058 ~ 29085174 (-) True XLOC_013482
TCONS_00026611 other upstream 349909 30854496 ~ 30855535 (-) True XLOC_013494
TCONS_00026625 other upstream 2020824 32525411 ~ 32527104 (-) True XLOC_013509
TCONS_00026632 other upstream 2585856 33090443 ~ 33093741 (-) False XLOC_013517
TCONS_00026656 other upstream 5068594 35573181 ~ 35573295 (-) True XLOC_013536
TCONS_00026662 other upstream 5950720 36455307 ~ 36465466 (-) True XLOC_013541

Expression Profile

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