RNA id: TU62808


Basic Information

Item Value
RNA id TU62808
length 226
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G56455
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 51473696 ~ 51473921 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAACATACACGACCGTGAACTACGTGTTGCAACAGGCACAAACACAAAAAaatatcccacaaagcaggtgggaACAGGGAcaccttaagtatgatccccaattagagacaacaaaCATCAGCTGCCTCTATTTGGGAACCATGCTAAgagcaccaacatagaaatgaaaagacaccccctagtcacgccctgacctacaacACCAAAGGTGCGGACGCCCTGATCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU62766 lncRNA upstream 30525 51442964 ~ 51443171 (+) True G56415
TU62495 lncRNA upstream 131436 51333433 ~ 51342260 (+) False shank2b
TU62494 lncRNA upstream 132769 51339067 ~ 51340927 (+) True shank2b
TU62530 lncRNA upstream 184184 51289109 ~ 51289512 (+) True G56185
TU62506 lncRNA upstream 218052 51255351 ~ 51255644 (+) True G56162
TU62828 lncRNA downstream 26284 51500205 ~ 51500443 (+) True G56475
TU62841 lncRNA downstream 44814 51518735 ~ 51555869 (+) True G56487
TU62861 lncRNA downstream 75448 51549369 ~ 51565773 (+) True G56507
TU62910 lncRNA downstream 133693 51607614 ~ 51607991 (+) True G56554
TU62896 lncRNA downstream 199654 51673575 ~ 51674734 (+) True G56541
XM_021604390.2 mRNA upstream 14899 51455131 ~ 51458797 (+) True LOC110524584
XM_021604377.2 mRNA upstream 22236 51449353 ~ 51451460 (+) False LOC110524575
XM_036979606.1 mRNA upstream 49393 51371939 ~ 51424303 (+) False LOC110524569
trnap-ugg-2 mRNA downstream 156247 51630168 ~ 51630239 (+) True trnap-ugg-2
trnap-agg mRNA downstream 156911 51630832 ~ 51630903 (+) True trnap-agg
XM_021604437.2 mRNA downstream 328076 51801997 ~ 51851775 (+) False LOC110524604
XM_036979638.1 mRNA downstream 341416 51815337 ~ 51851775 (+) False LOC110524604
XM_021604428.2 mRNA downstream 353937 51827858 ~ 51851775 (+) False LOC110524604
TU62774 other upstream 22761 51449822 ~ 51450935 (+) True LOC110524575
TU60888 other upstream 1389700 50037574 ~ 50083996 (+) True LOC118964841
TU59387 other upstream 2579784 48893497 ~ 48893912 (+) True G53181
TU58443 other upstream 3090439 48380542 ~ 48383257 (+) True G52324
TU58177 other upstream 3448738 48006674 ~ 48024958 (+) True G52080
TU65446 other downstream 2192294 53666215 ~ 53671273 (+) True LOC118936380
TU65626 other downstream 2514219 53988140 ~ 53988597 (+) True G59031
TU65668 other downstream 2570928 54044849 ~ 54062254 (+) False LOC110525327
TU66625 other downstream 3247267 54721188 ~ 54721463 (+) True G59963
TU67933 other downstream 4431587 55905508 ~ 55923376 (+) True G61202

Expression Profile