RNA id: TCONS_00027356


Basic Information

Item Value
RNA id TCONS_00027356
length 522
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id XLOC_013493
representative True

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 30752484 ~ 30753423 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCTGTGTACTGtaggtgtgagtgtgtgctggCAATGGCTTCCAGCCTGCctggtgtatgtgtgtttccatcAGTGTTTGGACTGATTGGACGACTGACTACCCCACTGTGTGGTTGAAGACTTTTTATATCAATCGGCGAATTTGATATAAGAGCACCTCATTCATGTTTGGATTCTCATTCGGATTGAGCTGGGGGCCCACGGGTGAAGGAACGTTTTTCGTGGTGCTGCTGCTGTGCGAGTGTGTGCTGTGGGATACTTCTGATGCATCAGGATGTGTGGCTGGAGTGTGCTGTGGTGTAAAAGTGTATGGTGTATAACTTTCAGTGGTGATCACTCCTGTTGGTAGCCCCAGTCCTGTGAGTTAATGTCTCTATTTGGGAACATTGATTTGGAGAGTATGATATTGAGTATTTTCAGTGTGCGGGTTGAATGTTAACCACTTTCAGTGCCTTTTATGAGTAAGTCCTCCAGAACTGACTGGTCATCCGGACCTATTTTAGTGTTagccttttaaaataa

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00027355 lncRNA downstream 1349468 29397940 ~ 29403016 (-) True XLOC_013485
TCONS_00027354 lncRNA downstream 2149369 28601593 ~ 28603115 (-) True XLOC_013479
TCONS_00026589 lncRNA downstream 2428698 28320730 ~ 28323786 (-) False XLOC_013478
TCONS_00027353 lncRNA downstream 2530736 28204344 ~ 28221748 (-) True XLOC_013477
TCONS_00026972 lncRNA downstream 2932578 27818134 ~ 27819906 (-) True XLOC_013475
TCONS_00027357 lncRNA upstream 206749 30960172 ~ 30961069 (-) True XLOC_013495
TCONS_00026613 lncRNA upstream 296066 31049489 ~ 31051597 (-) True XLOC_013496
TCONS_00026973 lncRNA upstream 970683 31724106 ~ 31724812 (-) True XLOC_013500
TCONS_00026974 lncRNA upstream 979200 31732623 ~ 31737816 (-) True XLOC_013501
TCONS_00026619 lncRNA upstream 1251635 32005058 ~ 32008314 (-) False XLOC_013504
TCONS_00026609 mRNA downstream 247832 30500690 ~ 30504652 (-) False XLOC_013492
TCONS_00026610 mRNA downstream 247897 30501720 ~ 30504587 (-) True XLOC_013492
TCONS_00026608 mRNA downstream 252995 30481030 ~ 30499489 (-) True XLOC_013491
TCONS_00026605 mRNA downstream 731005 29969732 ~ 30021479 (-) False XLOC_013490
TCONS_00026604 mRNA downstream 731605 29968205 ~ 30020879 (-) False XLOC_013490
TCONS_00026612 mRNA upstream 279699 31033122 ~ 31051847 (-) False XLOC_013496
TCONS_00026614 mRNA upstream 336534 31089957 ~ 31105391 (-) True XLOC_013497
TCONS_00026615 mRNA upstream 472865 31226288 ~ 31227615 (-) True XLOC_013498
TCONS_00026616 mRNA upstream 545653 31299076 ~ 31423569 (-) True XLOC_013499
TCONS_00026617 mRNA upstream 1159336 31912759 ~ 31916845 (-) True XLOC_013502
TCONS_00026599 other downstream 833379 29918062 ~ 29919105 (-) True XLOC_013487
TCONS_00026598 other downstream 854123 29895611 ~ 29898361 (-) True XLOC_013486
TCONS_00026594 other downstream 1444843 29307525 ~ 29307641 (-) True XLOC_013484
TCONS_00026593 other downstream 1539235 29213133 ~ 29213249 (-) True XLOC_013483
TCONS_00026592 other downstream 1667310 29085058 ~ 29085174 (-) True XLOC_013482
TCONS_00026611 other upstream 101073 30854496 ~ 30855535 (-) True XLOC_013494
TCONS_00026625 other upstream 1771988 32525411 ~ 32527104 (-) True XLOC_013509
TCONS_00026632 other upstream 2337020 33090443 ~ 33093741 (-) False XLOC_013517
TCONS_00026656 other upstream 4819758 35573181 ~ 35573295 (-) True XLOC_013536
TCONS_00026662 other upstream 5701884 36455307 ~ 36465466 (-) True XLOC_013541

Expression Profile

//