RNA id: TCONS_00027357


Basic Information

Item Value
RNA id TCONS_00027357
length 898
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id XLOC_013495
representative True

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 30960172 ~ 30961069 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTGAGCTGTACCGTTTTTCGTTGCAATCAATTACATATATCCATAATCTAATCCGTCCTTACATCAGTAACATCACCCATCGTGGCCGTGCTCTTACATCCGAGCAGATACTATGTGCAGCTTTACGTTTCTTTGCTAATGGAAGCTTTCTGTACAATATCGGGGATGCGGAGCATATTAGTAAGGCTACTGTATGCAGAGCTGTACGGAAAGTGTGCCTTGCTCTGAAACGCTTTCTGCACATTTTTGTAGTGTTTCCTGGCCACAAACCCCTGGGAGTCATCAAGGAGGAATTTTACAGAATTGCTGGTTTGTAGCATTCAAGCTGgttcaaatgtatttaatatgatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatttagttaataACATTTTGCTGTGACCTCTGaaagttttgtaatatttaaaattacctttaggattccccAATGTGGTTGGATGCATTGACGGCTCACATATACCTATCATTGCACCAACTGAAAATGAGTCAGACTATGTTAACAGGAAGTCAATCCACAGTATTAATGTGCAGGTACGTTGAGTTATGCagtttaaattgtttaaacaaCACACATACTATATCTCAAAACAATACTATATCTCATATCTTATTCTTTCCACTGTGAAGATTATATGTGATGCTGCACATATTATCACTAATGTTGAAGCCAAGTGGCCTGGCTCTGTTCATGACTCACGGATATATCGTGAGTGTACCCTAAGCAACAGACTGCAAAGTGGTAAGTTAATGTATGAACTACACACTTGGGCATTTTAATGCAGCACTAAAccaatgtgtctttttttttttacaggggaGATTGATGGCTTTCTGC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00027356 lncRNA downstream 206749 30752484 ~ 30753423 (-) True XLOC_013493
TCONS_00027355 lncRNA downstream 1557156 29397940 ~ 29403016 (-) True XLOC_013485
TCONS_00027354 lncRNA downstream 2357057 28601593 ~ 28603115 (-) True XLOC_013479
TCONS_00026589 lncRNA downstream 2636386 28320730 ~ 28323786 (-) False XLOC_013478
TCONS_00027353 lncRNA downstream 2738424 28204344 ~ 28221748 (-) True XLOC_013477
TCONS_00026613 lncRNA upstream 88420 31049489 ~ 31051597 (-) True XLOC_013496
TCONS_00026973 lncRNA upstream 763037 31724106 ~ 31724812 (-) True XLOC_013500
TCONS_00026974 lncRNA upstream 771554 31732623 ~ 31737816 (-) True XLOC_013501
TCONS_00026619 lncRNA upstream 1043989 32005058 ~ 32008314 (-) False XLOC_013504
TCONS_00027359 lncRNA upstream 1043989 32005058 ~ 32008862 (-) False XLOC_013504
TCONS_00026609 mRNA downstream 455520 30500690 ~ 30504652 (-) False XLOC_013492
TCONS_00026610 mRNA downstream 455585 30501720 ~ 30504587 (-) True XLOC_013492
TCONS_00026608 mRNA downstream 460683 30481030 ~ 30499489 (-) True XLOC_013491
TCONS_00026605 mRNA downstream 938693 29969732 ~ 30021479 (-) False XLOC_013490
TCONS_00026612 mRNA upstream 72053 31033122 ~ 31051847 (-) False XLOC_013496
TCONS_00026614 mRNA upstream 128888 31089957 ~ 31105391 (-) True XLOC_013497
TCONS_00026615 mRNA upstream 265219 31226288 ~ 31227615 (-) True XLOC_013498
TCONS_00026616 mRNA upstream 338007 31299076 ~ 31423569 (-) True XLOC_013499
TCONS_00026617 mRNA upstream 951690 31912759 ~ 31916845 (-) True XLOC_013502
TCONS_00026611 other downstream 104637 30854496 ~ 30855535 (-) True XLOC_013494
TCONS_00026599 other downstream 1041067 29918062 ~ 29919105 (-) True XLOC_013487
TCONS_00026598 other downstream 1061811 29895611 ~ 29898361 (-) True XLOC_013486
TCONS_00026594 other downstream 1652531 29307525 ~ 29307641 (-) True XLOC_013484
TCONS_00026593 other downstream 1746923 29213133 ~ 29213249 (-) True XLOC_013483
TCONS_00026625 other upstream 1564342 32525411 ~ 32527104 (-) True XLOC_013509
TCONS_00026632 other upstream 2129374 33090443 ~ 33093741 (-) False XLOC_013517
TCONS_00026656 other upstream 4612112 35573181 ~ 35573295 (-) True XLOC_013536
TCONS_00026662 other upstream 5494238 36455307 ~ 36465466 (-) True XLOC_013541
TCONS_00026673 other upstream 6448754 37409823 ~ 37415353 (-) False XLOC_013550

Expression Profile

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