RNA id: TU63675


Basic Information

Item Value
RNA id TU63675
length 243
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G57284
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 52133508 ~ 52133750 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gttaagaacaaattcttattttcaatgacggcctagaaacagtgagttaactgccttgttcaggggcagaacgacatattatttttaccttgtcggcacgggatttgatcttgcaaccttgcggttactactccaacactctaaccactaggctacctgctgccccagaataaggctgtaacgtaataaaatgttgaaaatgtcaagggttatgaatactttccgaatgcactgtatatagag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU63672 lncRNA downstream 5430 52127826 ~ 52128078 (-) True G57281
TU63654 lncRNA downstream 20425 52112861 ~ 52113083 (-) True G57263
TU63565 lncRNA downstream 139810 51992503 ~ 51993698 (-) True LOC110524646
TU63495 lncRNA downstream 244349 51888404 ~ 51889159 (-) True G57114
TU63471 lncRNA downstream 266626 51850982 ~ 51866882 (-) True LOC110524618
TU63692 lncRNA upstream 9102 52142852 ~ 52143091 (-) True G57301
TU64013 lncRNA upstream 178656 52312406 ~ 52313295 (-) True G57589
TU64099 lncRNA upstream 316087 52449837 ~ 52450058 (-) True G57674
TU64121 lncRNA upstream 332559 52466309 ~ 52466668 (-) True G57696
TU64123 lncRNA upstream 333915 52467665 ~ 52467906 (-) True G57698
XM_021604493.2 mRNA downstream 33312 51992437 ~ 52100196 (-) False LOC110524646
XM_021604448.2 mRNA downstream 246832 51850982 ~ 51886676 (-) False LOC110524618
XM_036979643.1 mRNA downstream 246832 51850982 ~ 51886676 (-) False LOC110524618
XM_021604414.2 mRNA downstream 458535 51673553 ~ 51674973 (-) False LOC110524599
XM_036979616.1 mRNA downstream 641789 51479046 ~ 51491719 (-) True LOC110524590
XM_036989650.1 mRNA upstream 58872 52192622 ~ 52197205 (-) True LOC118966705
XM_021604512.2 mRNA upstream 73046 52206796 ~ 52267115 (-) False LOC110524655
XM_021604503.2 mRNA upstream 73046 52206796 ~ 52321595 (-) True LOC110524655
XM_036979682.1 mRNA upstream 200145 52333895 ~ 52399230 (-) False LOC110524680
XM_036979695.1 mRNA upstream 200145 52333895 ~ 52399230 (-) False LOC110524680
TU63128 other downstream 386288 51746617 ~ 51747220 (-) True G56764
TU62721 other downstream 729165 51400727 ~ 51404343 (-) False G56372
TU61955 other downstream 1341439 50777747 ~ 50792069 (-) False LOC110524514
TU61953 other downstream 1349664 50777747 ~ 50783844 (-) False LOC110524514
TU64168 other upstream 362148 52495898 ~ 52496234 (-) True G57742
TU65118 other upstream 1005708 53139458 ~ 53140304 (-) True G58565
TU65226 other upstream 1200974 53334724 ~ 53338387 (-) False LOC110525078
TU65227 other upstream 1202859 53336609 ~ 53338387 (-) True LOC110525078
TU65285 other upstream 1292214 53425964 ~ 53426316 (-) True G58718

Expression Profile