RNA id: TU64419


Basic Information

Item Value
RNA id TU64419
length 402
lncRNA type antisense_over
GC content 0.45
exon number 2
gene id G57949
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 52546065 ~ 52551208 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAGGTTTGCCATTTCTAGCTTTATTTTAACTCTACATTTAGGGACAAACATTCATTAGGTATGCCTCACACCTTACATGGTATTTACTGTACTTACATATGAAAGATAATTTGGACAGTagagctcgtgtgtgtgtgtttgtggtgcaGGCAAAGATATGTACTGCCCTTCGTGTAGCTCAAGActacataatacatcataaaacTATATTCAAAACGTACCTCCCGATTCTCCACCCATCTCCAAAAGTGTGCTGTAGTTGGAGCAGTGTTGGATGATCCTCTGCATCTCCTCGTGGACCAGCTCTACACAGCGCAGACTGGGATCCTCTAGTCTCTTTACCTGTCTCTTCACAAGCAGCTCAAACGACACCTCGGGCACAAACAGGGCAGGCCGCgggcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU64382 lncRNA downstream 6008 52538346 ~ 52540057 (-) True G57917
TU64167 lncRNA downstream 50599 52495173 ~ 52495466 (-) True G57741
TU64156 lncRNA downstream 61838 52483952 ~ 52484227 (-) True G57730
TU64143 lncRNA downstream 66282 52479566 ~ 52479783 (-) True G57717
TU64141 lncRNA downstream 66763 52479076 ~ 52479302 (-) True G57715
TU64527 lncRNA upstream 152629 52703837 ~ 52755442 (-) True G58040
TU64494 lncRNA upstream 169864 52721072 ~ 52722815 (-) True G58010
TU64537 lncRNA upstream 172554 52723762 ~ 52724121 (-) True G58050
TU64546 lncRNA upstream 182880 52734088 ~ 52739028 (-) True G58059
TU64552 lncRNA upstream 193118 52744326 ~ 52747400 (-) True LOC110524838
XR_005051372.1 mRNA downstream 42302 52499339 ~ 52503763 (-) True LOC118964321
LOC110532407 mRNA downstream 83943 52459257 ~ 52462122 (-) True LOC110532407
XM_036979726.1 mRNA downstream 97765 52333895 ~ 52448300 (-) False LOC110524680
XM_021604632.2 mRNA upstream 13814 52565022 ~ 52588220 (-) False LOC110524730
XM_021604642.2 mRNA upstream 13814 52565022 ~ 52588220 (-) False LOC110524730
XM_021604624.2 mRNA upstream 13814 52565022 ~ 52588273 (-) False LOC110524730
XM_036979769.1 mRNA upstream 13814 52565022 ~ 52588273 (-) False LOC110524730
XM_036979771.1 mRNA upstream 13814 52565022 ~ 52588273 (-) False LOC110524730
TU64168 other downstream 49831 52495898 ~ 52496234 (-) True G57742
TU63128 other downstream 798845 51746617 ~ 51747220 (-) True G56764
TU62721 other downstream 1141722 51400727 ~ 51404343 (-) False G56372
TU61955 other downstream 1753996 50777747 ~ 50792069 (-) False LOC110524514
TU65118 other upstream 588250 53139458 ~ 53140304 (-) True G58565
TU65226 other upstream 783516 53334724 ~ 53338387 (-) False LOC110525078
TU65227 other upstream 785401 53336609 ~ 53338387 (-) True LOC110525078
TU65285 other upstream 874756 53425964 ~ 53426316 (-) True G58718
TU65415 other upstream 1037214 53588422 ~ 53588770 (-) True G58842

Expression Profile