RNA id: TU64570


Basic Information

Item Value
RNA id TU64570
length 1497
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G58080
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 52779287 ~ 52783498 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGATATTTGCTCTCTGAGCTGGATTGAGTTACACCTACTGCTCTGGTGGACGCCAAAAACACAGCGACATCTTCGCAGTGTACACACGCACCCGTGCACGCACGAACACATGTAGGGAACACCCAGTCATTGATCTACAAGACCTTTTGCATGCCTAACAACCCCAGGAGAAATCAGTGGTCTACTGCAGTCAAACTGTGCACTGTGCCCAGCTTCGCACGCTGGCCACCGGGAGctcctctgtcagaaacagcttgaagcactctgcctcagagGAAAATGGCAAGGGGatttgcactccagactgggactcatcaaagcaaacagcagggccaggaggggtgaaatggctggcgtccttccagctaccacagaactccACTGTACTGCATCCACTGttggtctgcctccatcaccaccagcatcttcaaatgGACCTGGGACTTCGTCAAGTGGACAAGGGGGCCTCCGATTCAGAGTTCTAAATGGCTACAAGGTTGGGGGGCAGCTCCTCACGGTCACTGTCAGAATTGAATTTTGGACTTTCATACTCAGACTCATCGTCAGAATTTATAAAAATGTCCAGAATTTCCGCATTTAtgagttgtctccttttgaagacattgctaatgctacagcttagctcgctagctacatacataaacaacaacactgaatggctcagagtgggagtgagaggttaCATGATTGACTGCCGGCACACACCacttgtatcaataaatcacCATCAGAAAGTGTTTTGTgtggtaattatttatttatttactgttttatttacaTGTTTTCAAGTgctggtgacaaatcatgcattccgattcttgcatagattgtaatggttacatattatgtgtgtaaaatacttttttgagggttgtactgattatgatgagctaagctaattctagctatgtgtggagccatgtttgttgacatacaatgcattctgggtttcaagtaaacgtctgtcagaccaaagatgttataacaaaatgaggtgaggAAGGGTTCACTCATTTTTCGAGTAAACTTCCAAAAGTGAATGATGTGATGTGAACAATGGTACACGACACatccccttcaacatgcatactatagACCAAACTCATCTGGtctcctcttattatctttggttgatgCGAAAAAACAGACATGGCGGCGTGCACAAACTACATATCGTCAGATTACTTCCGATTTCTAGAAAGCGTTTTACTCAAATATTTGttgatcaatggtgagctcagctgtgatgtgattaattataaatagtatttgctattagctaattcatagtGTAGTTTTTGTCAGCTGAGAGTTTGACCTaaaaatatgaccgcttgtgttacgttaatctttcctcagttagcgctaggacaaaGGTTGTTTACATTTtccagtttggatgattgtgttatgctgtacctacttctgtgaatgtctgaacattgattccaaaaataaactggtcacattctgga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU64527 lncRNA downstream 23845 52703837 ~ 52755442 (-) True G58040
TU64552 lncRNA downstream 31887 52744326 ~ 52747400 (-) True LOC110524838
TU64546 lncRNA downstream 40259 52734088 ~ 52739028 (-) True G58059
TU64537 lncRNA downstream 55166 52723762 ~ 52724121 (-) True G58050
TU64494 lncRNA downstream 56472 52721072 ~ 52722815 (-) True G58010
TU64629 lncRNA upstream 80866 52864364 ~ 52864565 (-) True G58138
TU64632 lncRNA upstream 81916 52865414 ~ 52865614 (-) True G58141
TU64997 lncRNA upstream 104041 52887539 ~ 52889793 (-) True G58458
TU65014 lncRNA upstream 129162 52912660 ~ 52915682 (-) True G58475
TU65008 lncRNA upstream 141334 52924832 ~ 52925473 (-) True G58469
XM_021604776.2 mRNA downstream 10123 52766482 ~ 52769164 (-) False LOC110524843
XM_036979844.1 mRNA downstream 10123 52766482 ~ 52769164 (-) False LOC110524843
XM_036979852.1 mRNA downstream 10123 52766482 ~ 52769164 (-) False LOC110524843
XM_036979858.1 mRNA downstream 10123 52766482 ~ 52769164 (-) False LOC110524843
XM_036979861.1 mRNA downstream 10123 52766482 ~ 52769164 (-) False LOC110524843
XM_036989674.1 mRNA upstream 27351 52810849 ~ 52815285 (-) True LOC110532414
XM_021598564.2 mRNA upstream 32663 52816161 ~ 52818942 (-) True LOC110521107
XM_036979943.1 mRNA upstream 160362 52943860 ~ 52947619 (-) False LOC110524896
XM_021604861.2 mRNA upstream 160362 52943860 ~ 52955716 (-) True LOC110524896
XR_005052075.1 mRNA upstream 226470 53009968 ~ 53020119 (-) False LOC118964864
TU64168 other downstream 283053 52495898 ~ 52496234 (-) True G57742
TU63128 other downstream 1032067 51746617 ~ 51747220 (-) True G56764
TU62721 other downstream 1374944 51400727 ~ 51404343 (-) False G56372
TU61955 other downstream 1987218 50777747 ~ 50792069 (-) False LOC110524514
TU65118 other upstream 355960 53139458 ~ 53140304 (-) True G58565
TU65226 other upstream 551226 53334724 ~ 53338387 (-) False LOC110525078
TU65227 other upstream 553111 53336609 ~ 53338387 (-) True LOC110525078
TU65285 other upstream 642466 53425964 ~ 53426316 (-) True G58718
TU65415 other upstream 804924 53588422 ~ 53588770 (-) True G58842

Expression Profile