RNA id: TU64997


Basic Information

Item Value
RNA id TU64997
length 2217
lncRNA type antisense_over
GC content 0.53
exon number 2
gene id G58458
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 52887539 ~ 52889793 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCACAATATACTTTCATCCTTGCTTGGGAAGCTAGCTGCTTGATCAAAGTCAAAAACATTTAATCTTTAATATATTCACTTGTGTAACAAGTAAACAAAGAGGTTCAGATTTAGGATAGCACTTTAAAAAAAAGCGACATCCTACTTTCACCTATGGTACTTTATTTTCctacaataaaataataaaaaagttCACAATTCACATTTGAAAAATACggaacaaaataaataacagttttttcttcttttttttcaaaCAGTGTGGACGAACATGTCAACTTCTTTACAAGTGAATGTCAGTAACTGGTCAACATAAGTGGCTATCACTTTTGTCATTATTACCTCTGCTATCAAGATGAAGTAAAATTAGAATAGGATCATGAGCCATTTACTTGCTCAACTTTATTTAGCAAAAATAGAATTCTTCCAAGATCCGTAGCAGTATGTATGGAACCATTAAGAAGGGCTGTGTGGATGCACTAAATATAAAGACAGCCAGTCCTAGGTCGTGTTCATTCGGCACCACATGGAAAAAAACACAGAATCAGAGAATATTTGTCCAATAAGGACTACCCACTTGTGTTTTCCTGTTTCAAAACTTTTTGCTACGGTGAGCATGCCCTTTAGATAGGACTGAAGGATCTTGAATCTTCAGAGCAACAAAGCACTAAAGATGAAACACAAAGCTATACTGGGATTTGGTCATCACAGACTGATGAGCCATTCAACTACCAGACCACTTACTGTTAGACAGGTCCTAAATCTGCTtttgctgtcttgccaactcctccTGACAATGACCAAGAGAGTTGGCAAGATAGCacatacagatctgggaccaggcttactTACTGCAGTTCATCTCCCCAACAGCTTTTCAATGTATTGATGGCTCTACACAAGCAGTTTAAAGACAACTAATAGTTTTAGCAATCAAACTCATAGTTTATAGCGTGAAAAAGGGCTTCTCCTCATTCAGTGACAAAACCTTATTTAACACTATTGGACAGTATTATGACTCCTCGCAGCAGTGATCCAATTAACTTAGAGCAAATTAGAATAGACCTGAGCACCATTCAATTCATAGTTTAAAAACATTATTCTACATATCTCTATTATTAATACTACAGTGTATATTCAAAATCCATACAGAAATACTTGTAGATATTTCCGTAATCagtagcagggttggggtcagttccatttcaattcaggaagtgcaCTCCAATTCTAATTCTCTCCAAAGTTTTTTATGAGGAACCTTTGGAATTTAGtctactttctgaattgactggaattgaaatggaattgacctcaaCCCTGGCACTATGCAAGTTCTAACAGTGTGCCTGGCACAACAGACACCCCGAAAACTACAACCATGTCCTTCAAAAACTACAACCATGCATGTGACCTGTCCTCGCAATATCACATGGGAGTTCTATCTACACACATAAGTGAAAAATACACACAAAGAATGCACAAAATGCACTTCACACTATGATTAAAAACAACTTAATAAAAACTAGTCTATTCAGACTGTCATGACAAGACAGTGCTGGTTTGTTTTACAAGAAGCTGGTGTTGGTTAGGTTGAATgcccttcctttctctccttaGCGGGGACGAGGAGAAGTGAACAAGGAAGGGACAGGGTGAGACAGTCTACCAGCCAGATTAAATGTCAGTCAGTCCTCCAAGATGGTCAACCATGTATAAATAGATGAAGATGGAGTTGGTGACCAGATGAAGGGGGTCTTTGACCTCTATTGGACAGCCTGGTAAAATAGTAGAAAGAATTATAATAAAAGAGAGCAGGGTGGAGTAGGTGTATTGCTTACTTGCCTCCACCCTCAGCTCCTGCACTTTGGCTGCTGCTGGCCCCCATGCCCAGAGGCACAATCACATTATCGACCACGGCATTTACCACCTTATCAACCGTGCTATACAGGTGAACCTTGGCGTCGTTTATCAAACCCTTGACGGACTGGACCTGATCTGCATCAAGGTGCTGGATGACGAAGTAGATGGAACCGGCTACAGTGATGAGCACCATGAGCTTTAGTAGGACAGAGAGGAATCCTTGCCTGGCCCGTTCTGAGCCCAGGGAGCTGCACTCAGAGTGAGACTCTGTGTAGATGGAGCGCTCCAGGAGAGACTTGTTCAGCCAATAGTTGCTGGGTTTCACCGGTCGGCCAGCCGCACCATGGATCGATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU64632 lncRNA downstream 21925 52865414 ~ 52865614 (-) True G58141
TU64629 lncRNA downstream 22974 52864364 ~ 52864565 (-) True G58138
TU64570 lncRNA downstream 104041 52779287 ~ 52783498 (-) True G58080
TU64552 lncRNA downstream 140139 52744326 ~ 52747400 (-) True LOC110524838
TU64546 lncRNA downstream 148511 52734088 ~ 52739028 (-) True G58059
TU65014 lncRNA upstream 22867 52912660 ~ 52915682 (-) True G58475
TU65008 lncRNA upstream 35039 52924832 ~ 52925473 (-) True G58469
TU65018 lncRNA upstream 36430 52926223 ~ 52926551 (-) True G58479
TU65024 lncRNA upstream 51430 52941223 ~ 52941464 (-) True G58485
TU65057 lncRNA upstream 117690 53007483 ~ 53020103 (-) False LOC118964864
XM_021598564.2 mRNA downstream 68597 52816161 ~ 52818942 (-) True LOC110521107
XM_036989674.1 mRNA downstream 72254 52810849 ~ 52815285 (-) True LOC110532414
XM_036979879.1 mRNA downstream 118375 52766482 ~ 52769164 (-) False LOC110524843
XM_036979943.1 mRNA upstream 54067 52943860 ~ 52947619 (-) False LOC110524896
XM_021604861.2 mRNA upstream 54067 52943860 ~ 52955716 (-) True LOC110524896
XR_005052075.1 mRNA upstream 120175 53009968 ~ 53020119 (-) False LOC118964864
XM_021604901.2 mRNA upstream 157947 53047740 ~ 53059946 (-) True LOC110524937
XR_005052089.1 mRNA upstream 187865 53077658 ~ 53084723 (-) True LOC110524998
TU64168 other downstream 391305 52495898 ~ 52496234 (-) True G57742
TU63128 other downstream 1140319 51746617 ~ 51747220 (-) True G56764
TU62721 other downstream 1483196 51400727 ~ 51404343 (-) False G56372
TU61955 other downstream 2095470 50777747 ~ 50792069 (-) False LOC110524514
TU65118 other upstream 249665 53139458 ~ 53140304 (-) True G58565
TU65226 other upstream 444931 53334724 ~ 53338387 (-) False LOC110525078
TU65227 other upstream 446816 53336609 ~ 53338387 (-) True LOC110525078
TU65285 other upstream 536171 53425964 ~ 53426316 (-) True G58718
TU65415 other upstream 698629 53588422 ~ 53588770 (-) True G58842

Expression Profile