RNA id: TCONS_00026973


Basic Information

Item Value
RNA id TCONS_00026973
length 367
lncRNA type intronic
GC content 0.39
exon number 2
gene id XLOC_013500
representative True

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 31724106 ~ 31724812 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTTTGCGTTTCTGTATAGTTCTGCATAGAATAAGAGCTGCAATGGCCAGTTCACGCGACGGCAGCCCAATAAAGAAACGGAAGTAATAGAATTCAGTGCAACAGCAGTATGGACGTGGAAGACGTGGCACAGAAAAAAATGTGTCTTTGGAAGGCTGGgggttgcacacacacacacacacacaaaaaaaaagcatttttgcttGTTCATCAAAGGTCCTGCAATCACCTTATGCCACTTATTAAACAACATTTGCATCCTGGAAGTACCATGAACCTTGGCAATCTTGGCAATAACCACTTTCCCAGTTTTGCAGAGATTAATTATCTTAAAActaaaaatgtgtttatgttttttataattgACA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00026613 lncRNA downstream 672509 31049489 ~ 31051597 (-) True XLOC_013496
TCONS_00027357 lncRNA downstream 763037 30960172 ~ 30961069 (-) True XLOC_013495
TCONS_00027356 lncRNA downstream 970683 30752484 ~ 30753423 (-) True XLOC_013493
TCONS_00027355 lncRNA downstream 2321090 29397940 ~ 29403016 (-) True XLOC_013485
TCONS_00027354 lncRNA downstream 3120991 28601593 ~ 28603115 (-) True XLOC_013479
TCONS_00026974 lncRNA upstream 7811 31732623 ~ 31737816 (-) True XLOC_013501
TCONS_00026619 lncRNA upstream 280246 32005058 ~ 32008314 (-) False XLOC_013504
TCONS_00027359 lncRNA upstream 280246 32005058 ~ 32008862 (-) False XLOC_013504
TCONS_00027358 lncRNA upstream 280246 32005058 ~ 32008862 (-) False XLOC_013504
TCONS_00027360 lncRNA upstream 280246 32005058 ~ 32009056 (-) False XLOC_013504
TCONS_00026616 mRNA downstream 300537 31299076 ~ 31423569 (-) True XLOC_013499
TCONS_00026615 mRNA downstream 496491 31226288 ~ 31227615 (-) True XLOC_013498
TCONS_00026614 mRNA downstream 618715 31089957 ~ 31105391 (-) True XLOC_013497
TCONS_00026612 mRNA downstream 672259 31033122 ~ 31051847 (-) False XLOC_013496
TCONS_00026609 mRNA downstream 1219454 30500690 ~ 30504652 (-) False XLOC_013492
TCONS_00026617 mRNA upstream 187947 31912759 ~ 31916845 (-) True XLOC_013502
TCONS_00026618 mRNA upstream 240535 31965347 ~ 31969939 (-) True XLOC_013503
TCONS_00026623 mRNA upstream 410558 32135370 ~ 32139894 (-) True XLOC_013506
TCONS_00026626 mRNA upstream 949400 32674212 ~ 32677755 (-) False XLOC_013510
TCONS_00026627 mRNA upstream 949424 32674236 ~ 32709328 (-) False XLOC_013510
TCONS_00026611 other downstream 868571 30854496 ~ 30855535 (-) True XLOC_013494
TCONS_00026599 other downstream 1805001 29918062 ~ 29919105 (-) True XLOC_013487
TCONS_00026598 other downstream 1825745 29895611 ~ 29898361 (-) True XLOC_013486
TCONS_00026594 other downstream 2416465 29307525 ~ 29307641 (-) True XLOC_013484
TCONS_00026593 other downstream 2510857 29213133 ~ 29213249 (-) True XLOC_013483
TCONS_00026625 other upstream 800599 32525411 ~ 32527104 (-) True XLOC_013509
TCONS_00026632 other upstream 1365631 33090443 ~ 33093741 (-) False XLOC_013517
TCONS_00026656 other upstream 3848369 35573181 ~ 35573295 (-) True XLOC_013536
TCONS_00026662 other upstream 4730495 36455307 ~ 36465466 (-) True XLOC_013541
TCONS_00026673 other upstream 5685011 37409823 ~ 37415353 (-) False XLOC_013550

Expression Profile

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