RNA id: TU65418


Basic Information

Item Value
RNA id TU65418
length 233
lncRNA type inter_gene
GC content 0.55
exon number 1
gene id G58845
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 53590881 ~ 53591113 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctcatatcaaacatctccaatcgaaaatcaaatcaagagtcggctttctattccgcaacaaagcctccttcactcacgccgccaagcttaccctagtaaaactgactatcctaccgatcctcgacttcggcgatgtcatctacaaaattgcttccaacactctactcagcaaactggatgcagtctatcacagtgccatccgttttgtcactaaagcaccttataccacccac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65416 lncRNA upstream 720 53589913 ~ 53590161 (+) True G58843
TU65413 lncRNA upstream 3683 53586962 ~ 53587198 (+) True G58840
TU64874 lncRNA upstream 32607 53437586 ~ 53558274 (+) True G58346
TU64909 lncRNA upstream 163671 53426964 ~ 53427210 (+) True G58372
TU64908 lncRNA upstream 163959 53426627 ~ 53426922 (+) True G58371
TU65422 lncRNA downstream 5920 53597033 ~ 53597391 (+) True G58849
TU65428 lncRNA downstream 7088 53598201 ~ 53634505 (+) True G58855
TU65438 lncRNA downstream 25708 53616821 ~ 53620959 (+) True LOC110516195
TU65445 lncRNA downstream 66689 53657802 ~ 53692144 (+) True G58872
TU65425 lncRNA downstream 122224 53713337 ~ 53713755 (+) True G58852
XM_036980134.1 mRNA upstream 33272 53491846 ~ 53557609 (+) False LOC110525170
XR_005052119.1 mRNA downstream 7081 53598194 ~ 53610739 (+) False LOC110516195
XM_036980156.1 mRNA downstream 7081 53598194 ~ 53610792 (+) False LOC110516195
XM_036980151.1 mRNA downstream 7081 53598194 ~ 53610835 (+) False LOC110516195
XM_036980182.1 mRNA downstream 7081 53598194 ~ 53610835 (+) False LOC110516195
XM_036980164.1 mRNA downstream 7081 53598194 ~ 53616092 (+) False LOC110516195
TU62774 other upstream 2139946 51449822 ~ 51450935 (+) True LOC110524575
TU60888 other upstream 3506885 50037574 ~ 50083996 (+) True LOC118964841
TU59387 other upstream 4696969 48893497 ~ 48893912 (+) True G53181
TU58443 other upstream 5207624 48380542 ~ 48383257 (+) True G52324
TU58177 other upstream 5565923 48006674 ~ 48024958 (+) True G52080
TU65446 other downstream 75102 53666215 ~ 53671273 (+) True LOC118936380
TU65626 other downstream 397027 53988140 ~ 53988597 (+) True G59031
TU65668 other downstream 453736 54044849 ~ 54062254 (+) False LOC110525327
TU66625 other downstream 1130075 54721188 ~ 54721463 (+) True G59963
TU67933 other downstream 2314395 55905508 ~ 55923376 (+) True G61202

Expression Profile