RNA id: TU65422


Basic Information

Item Value
RNA id TU65422
length 359
lncRNA type inter_gene
GC content 0.61
exon number 1
gene id G58849
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 53597033 ~ 53597391 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtgactagtgatgcatttattagatccaatttttaattattaaagtggctagagattgagtcagtatgttggcggcagccactcaatgttagtgatggctggttaacagtctgatggcctagaaatagaagctgtttttcagtctcggtgtcctgtgtgaatttaagtatgctctctctaattctctctttctctctctctgaggacctgcgccctaggaccatgcctcaggactacctggcatgatgactccttgctgtccccagtccacctggctgtgctgctgctccagtttcatctgttctgcctgcggctatggaatcctgacctgttcaccggacgtgctacctgtcccagac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65418 lncRNA upstream 5920 53590881 ~ 53591113 (+) True G58845
TU65416 lncRNA upstream 6872 53589913 ~ 53590161 (+) True G58843
TU65413 lncRNA upstream 9835 53586962 ~ 53587198 (+) True G58840
TU64874 lncRNA upstream 38759 53437586 ~ 53558274 (+) True G58346
TU64909 lncRNA upstream 169823 53426964 ~ 53427210 (+) True G58372
TU65428 lncRNA downstream 810 53598201 ~ 53634505 (+) True G58855
TU65438 lncRNA downstream 19430 53616821 ~ 53620959 (+) True LOC110516195
TU65445 lncRNA downstream 60411 53657802 ~ 53692144 (+) True G58872
TU65425 lncRNA downstream 115946 53713337 ~ 53713755 (+) True G58852
TU65485 lncRNA downstream 162443 53759834 ~ 53760090 (+) True G58906
XM_036980134.1 mRNA upstream 39424 53491846 ~ 53557609 (+) False LOC110525170
XR_005052119.1 mRNA downstream 803 53598194 ~ 53610739 (+) False LOC110516195
XM_036980156.1 mRNA downstream 803 53598194 ~ 53610792 (+) False LOC110516195
XM_036980151.1 mRNA downstream 803 53598194 ~ 53610835 (+) False LOC110516195
XM_036980182.1 mRNA downstream 803 53598194 ~ 53610835 (+) False LOC110516195
XM_036980164.1 mRNA downstream 803 53598194 ~ 53616092 (+) False LOC110516195
TU62774 other upstream 2146098 51449822 ~ 51450935 (+) True LOC110524575
TU60888 other upstream 3513037 50037574 ~ 50083996 (+) True LOC118964841
TU59387 other upstream 4703121 48893497 ~ 48893912 (+) True G53181
TU58443 other upstream 5213776 48380542 ~ 48383257 (+) True G52324
TU58177 other upstream 5572075 48006674 ~ 48024958 (+) True G52080
TU65446 other downstream 68824 53666215 ~ 53671273 (+) True LOC118936380
TU65626 other downstream 390749 53988140 ~ 53988597 (+) True G59031
TU65668 other downstream 447458 54044849 ~ 54062254 (+) False LOC110525327
TU66625 other downstream 1123797 54721188 ~ 54721463 (+) True G59963
TU67933 other downstream 2308117 55905508 ~ 55923376 (+) True G61202

Expression Profile