RNA id: TCONS_00026618


Basic Information

Item Value
RNA id TCONS_00026618
length 2535
RNA type mRNA
GC content 0.45
exon number 6
gene id XLOC_013503
representative True

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 31965347 ~ 31969939 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGTCAGGGTTTGTAATGCAAACCCAACCTGTAGTCTAAAGAAAAGTTTTGTCTCGGAAAGCTTGTATAAAGACGGCGATGTGATTATTGGTGGTCTGTTTCCAGTTCATGTTCAATCCCCAGTGCCTGATCCTGCTTTTACTCAACAACAGCATGGTTCCAACTGCCAGGGtattgaCCTTCGATCATATCGCTGGCTCAGAGCTATGATCTTCACTGTGGATGAGATTAATAGGGACCCTGTCCTGCTACCAAATGTTACTCTGGGTTACCTAGTAGCTGATACTTGTTTAGCTGAGAGTACAACACTGAGTGCTGCTTTAGCTCTGGTAACAGGGCAAGAAACAACAGTGTTTAGCACCGAATGCAATGGAGCCCCAATGGTTCCTGTCATTATTGGTGATGCTCGTTCCTCTGCCTCAGTGGTGGTGGCAGACACACTGGGAGTGTTTGATATTCCTATGGTGAGTTATTTTGCATCATGTGCTTGTCTCAGTGACAAGCACAGATTTCACACTTTTCTACGCACTGTCCCTAGTGATGCCTTCCAGGCCAAGGCCATGGCCCGTCTGCTTCATCTACTAGACTGGAACTGGGTGGGGGTGGTTGCAGGGGATGATGAATATGGCAAAAGTGGCTCACACCTGCTTTTAAAAGAGCTCGAAGGTTCAGGGGTCTGTGTGGACTATGTTGAAGTCATTCCTAAATCCCATTCTCAGAGCCGGATCAAGCAGATTATGGAGAGGATCCAGAGTTCCACAGCTAGTGTGGTGGTGACATTTGCCATCGGGCCAGACCTTGAAGTTATTTTCAAAGAAATGGTGGTGCAGAATGTGACCAATAGGCAGTGGATAGCAACAGAGGCATGGAGCACTACTGTTCAGTACTCTGACCCAGAAAGCATTCCTCTCCTAGCTGGTACCATTGGCTTTGCTTTGCGCAGAGCTGAAATTAAGGGGCTTGGTGCTTTTCTCACCCAACTGAATCCTGTGAAGCAATCAAATGAACCATTTGTAAAAGATGTATGGGAAGAAATTTTTAGGTGCTCTTTAGCACATGACAGGCAGCCTTCATTTAAAAGACCAAAGTGCACAGGATCAGAGAGTGTGGAAAAACATGGCCGCATCTACACAGACGTTTCACAGCTGAGAGTCACTTACAATGTGTATAAGGCTGTGTATGCCATTGCCTATGCTCTTCACAACATGATTGCCTGCCTGCCGGGTAGGGGCCCTTTTGAAAATGGACAGTGTCCAGATGCAACTCAAGTAAAGCCAAGGCAGCTTCTCCACTACCTAAATGCAGTAAACTTCACAACACCAGTGGGAGAGCTGGTCTATTTTGAAAATAATGGTGAGCCGTCTGCATCTTATGACATAATGAATTGGTATGTCAATAAAAGTGGAGAAGTAAATTTTGTCCAGGTGGGACAGTATGATGCAGCCAAAGGACCAGGCCAGGAGCTGAACATAAACATTGAAAAAGTGATTTGGGGAGGGGGCTGGGGTAACCAGGTCCCTGTGTCTGTATGCAGTGTGAGCTGTCTTCCAGGCACTAGAAAGGTTGTACAAAAAAGAAAACCTATCTGCTGTTTTGACTGTATCCCTTGTGCAGCAGGTGAAATCAGCAATATGTCAGACTCTACGGAGTGTATGAGATGTCCTGAGAAGTTCTGGTCAAACACCGAAAAAACTAAGTGCATTCCAAAGGTTGTAGAATTTCTGTCCTTACAAGATACCATGGGAATTGTGCTGACAGTCTTATCTGTCACTGGGGCTACACTAACTACAACTGTTTTGGCAACTTTTTTCCATCATCGTGACACGCCACTTGTGCGAGCTTACAACTCAGAGCTGAGCTTCCTGTTGTTGATGTCACTCACACTTTGTTTCTTGTGTGCTCTAGTTTTTATTGGCCGGCCTGCAGCATGGAACTGCATGTTACGTCACACTTTATTTGGAGTGAGTTTTGTTACCTGTATTGGTTGTATCCTCAGTAAGACTGTGGTGGTGCTGGTAGCTTTTCGAGCTACTCGGCCTGGATCTCATTTGATGCAGTACTTTGGGCCCATCCAGCAGAGGGCAGCAATCTTCATTTGCACGCTGGTTCAGGTTGTCATATGTTTGCTGTGGCTACTGCTGGATCCCCCTCAGCCCACAGAGAGTGCAGGGGAGTTAGGTGCTCGATTGATCCTGCAGTGCACTGTGGGATCTGTTGTGGGCTTTGTATTTGTGCTGGGGTACATTGGTATGTTAGCAGTTGTCTGCTTCTTGTTGGCTTTCTTTGCTAGAAAGCTTCCAGACAATTTCAACGAAGCTAAATTCATTACTTTTAGCATGTTTATTTTCTGTGCTGTGTGGGCTGCATTTGTGCCAGCATATATCAGCTCCCCAGGAAAGTACACAGTGGCTGTAGAGATTTTTGCTATTTTGGCTTCCAGTTATGGCctgttaatttgtatatttactcCAAAATGTTATATCATTCTGCTTAAACctgagaaaaacacaaaaaagacgATGATGGCTAGATAA

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007165 signal transduction biological_process
GO:0005886 plasma membrane cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0038023 signaling receptor activity molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050419-111 Predicted to enable G protein-coupled receptor activity. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane.

Ensembl:

ensembl_id ENSDART00000171516

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00026974 lncRNA downstream 227531 31732623 ~ 31737816 (-) True XLOC_013501
TCONS_00026973 lncRNA downstream 240535 31724106 ~ 31724812 (-) True XLOC_013500
TCONS_00026613 lncRNA downstream 913750 31049489 ~ 31051597 (-) True XLOC_013496
TCONS_00027357 lncRNA downstream 1004278 30960172 ~ 30961069 (-) True XLOC_013495
TCONS_00027356 lncRNA downstream 1211924 30752484 ~ 30753423 (-) True XLOC_013493
TCONS_00026619 lncRNA upstream 35119 32005058 ~ 32008314 (-) False XLOC_013504
TCONS_00027359 lncRNA upstream 35119 32005058 ~ 32008862 (-) False XLOC_013504
TCONS_00027358 lncRNA upstream 35119 32005058 ~ 32008862 (-) False XLOC_013504
TCONS_00027360 lncRNA upstream 35119 32005058 ~ 32009056 (-) False XLOC_013504
TCONS_00026620 lncRNA upstream 35443 32005382 ~ 32007357 (-) False XLOC_013504
TCONS_00026617 mRNA downstream 48502 31912759 ~ 31916845 (-) True XLOC_013502
TCONS_00026616 mRNA downstream 541778 31299076 ~ 31423569 (-) True XLOC_013499
TCONS_00026615 mRNA downstream 737732 31226288 ~ 31227615 (-) True XLOC_013498
TCONS_00026614 mRNA downstream 859956 31089957 ~ 31105391 (-) True XLOC_013497
TCONS_00026612 mRNA downstream 913500 31033122 ~ 31051847 (-) False XLOC_013496
TCONS_00026623 mRNA upstream 165431 32135370 ~ 32139894 (-) True XLOC_013506
TCONS_00026626 mRNA upstream 704273 32674212 ~ 32677755 (-) False XLOC_013510
TCONS_00026627 mRNA upstream 704297 32674236 ~ 32709328 (-) False XLOC_013510
TCONS_00026628 mRNA upstream 735526 32705465 ~ 32709297 (-) True XLOC_013510
TCONS_00026630 mRNA upstream 1104779 33074718 ~ 33080454 (-) True XLOC_013515
TCONS_00026611 other downstream 1109812 30854496 ~ 30855535 (-) True XLOC_013494
TCONS_00026599 other downstream 2046242 29918062 ~ 29919105 (-) True XLOC_013487
TCONS_00026598 other downstream 2066986 29895611 ~ 29898361 (-) True XLOC_013486
TCONS_00026594 other downstream 2657706 29307525 ~ 29307641 (-) True XLOC_013484
TCONS_00026593 other downstream 2752098 29213133 ~ 29213249 (-) True XLOC_013483
TCONS_00026625 other upstream 555472 32525411 ~ 32527104 (-) True XLOC_013509
TCONS_00026632 other upstream 1120504 33090443 ~ 33093741 (-) False XLOC_013517
TCONS_00026656 other upstream 3603242 35573181 ~ 35573295 (-) True XLOC_013536
TCONS_00026662 other upstream 4485368 36455307 ~ 36465466 (-) True XLOC_013541
TCONS_00026673 other upstream 5439884 37409823 ~ 37415353 (-) False XLOC_013550

Expression Profile

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