RNA id: TU65550


Basic Information

Item Value
RNA id TU65550
length 287
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G58962
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 53812083 ~ 53812369 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atatataatttATGTCAACCACTTGCGTGGTGCAAAGGACTGTTTTTATTTGCAACTAGTAAgaacttttttttttgtgagacCCTGATTCACGTGAACGTACAAGTCCATTTCTGTTTTTTCTATTAATGCCAGGAGAATCCGTAATATTTTTAAGAGACAGGAATGAGGTTTCTAAAGCAATTTCCTGTATTGAAGACTTTTCCTTAGTTTCGGATTTGAAAATTAATATCAATAAGTCAGTCTTATTTCCACTCAAGGATTGTGTTTTACAGGAAGTATATGGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65488 lncRNA upstream 46671 53765180 ~ 53765412 (+) True G58909
TU65486 lncRNA upstream 51213 53760659 ~ 53760870 (+) True G58907
TU65485 lncRNA upstream 51993 53759834 ~ 53760090 (+) True G58906
TU65425 lncRNA upstream 98328 53713337 ~ 53713755 (+) True G58852
TU65445 lncRNA upstream 119939 53657802 ~ 53692144 (+) True G58872
TU65551 lncRNA downstream 705 53813074 ~ 53813429 (+) True G58963
TU65552 lncRNA downstream 2279 53814648 ~ 53854415 (+) True G58964
TU65567 lncRNA downstream 90774 53903143 ~ 53903594 (+) True LOC110525273
TU65611 lncRNA downstream 142476 53954845 ~ 53955147 (+) True G59016
TU65584 lncRNA downstream 154704 53967073 ~ 53969523 (+) False G58993
XM_036980277.1 mRNA upstream 106662 53632831 ~ 53705421 (+) False LOC118936380
XR_005052132.1 mRNA upstream 125985 53685401 ~ 53686098 (+) True LOC118964886
XM_036980232.1 mRNA upstream 126695 53632831 ~ 53685388 (+) False LOC118936380
XM_036980268.1 mRNA upstream 128303 53632831 ~ 53683780 (+) False LOC118936380
XM_036980210.1 mRNA upstream 131731 53632831 ~ 53680352 (+) False LOC118936380
XM_036989706.1 mRNA downstream 74551 53886920 ~ 53903845 (+) False LOC110525273
XM_021605298.2 mRNA downstream 101559 53913928 ~ 53938476 (+) True LOC110525287
XM_036980382.1 mRNA downstream 143426 53955795 ~ 53966503 (+) False LOC110525297
XM_036980387.1 mRNA downstream 143462 53955831 ~ 53966503 (+) False LOC110525297
XM_021605334.2 mRNA downstream 143535 53955904 ~ 53966503 (+) True LOC110525297
TU65446 other upstream 140810 53666215 ~ 53671273 (+) True LOC118936380
TU62774 other upstream 2361148 51449822 ~ 51450935 (+) True LOC110524575
TU60888 other upstream 3728087 50037574 ~ 50083996 (+) True LOC118964841
TU59387 other upstream 4918171 48893497 ~ 48893912 (+) True G53181
TU58443 other upstream 5428826 48380542 ~ 48383257 (+) True G52324
TU65626 other downstream 175771 53988140 ~ 53988597 (+) True G59031
TU65668 other downstream 232480 54044849 ~ 54062254 (+) False LOC110525327
TU66625 other downstream 908819 54721188 ~ 54721463 (+) True G59963
TU67933 other downstream 2093139 55905508 ~ 55923376 (+) True G61202
TU68019 other downstream 2207107 56019476 ~ 56030371 (+) True G61284

Expression Profile